BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331925
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56110.1 | Symbols: AtMYB103, ATMYB80, MYB103, MS188 | myb d... 1496 0.0
> AT5G56110.1 | Symbols: AtMYB103, ATMYB80, MYB103, MS188 | myb
domain protein 103 | chr5:22719191-22720664 FORWARD LENGTH=963
Length=963
Score = 1496 bits (810), Expect = 0.0
Identities = 923/976 (95%), Gaps = 14/976 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGGATTCCATGTTGTGAAAAGGAGAATGTGAAGAGAGGACAATGGACTCCTGAA 60
Query 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACAACAAATTGGCTTCTTATATTGCTCAACATGGTACTCGTAATTGGCGTCTCATC 120
Query 121 CCTAAGAACGCTGGGTTGCAAAGATGCGGGAAGAGTTGTAGGCTGCGATGGACGAACTAT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 CCTAAGAATGCTGGGTTGCAAAGATGTGGGAAGAGTTGTAGGCTGCGATGGACAAACTAT 180
Query 181 TTGCGTCCGGATTTGAAACACGGCCAGTTCTCGGAGACTGAGGAACATATCATTGTCAAG 240
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 181 CTGCGTCCGGATTTGAAACATGGCCAGTTCTCGGAGGCTGAAGAACATATCATTGTCAAG 240
Query 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGGGCAACTTCCTGGTCGAACG 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 241 TTTCACTCTGTTCTTGGTAACCGGTGGTCGTTGATTGCGGCGCAACTTCCTGGTCGGACA 300
Query 301 GACAACGATGTGAAAAACTATTGGAACACGAAGCTGAAGAAGAAGTTGTCGGGAATGGGA 360
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GACAACGATGTGAAAAATTATTGGAACACGAAGCTGAAGAAGAAGTTGTCAGGAATGGGA 360
Query 361 ATAGATCCAGTTACCCACAAGCCTTTCTCGCATCTAATGGCAGAGATCACCACTACACTT 420
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATAGATCCGGTGACCCACAAGCCTTTCTCGCATCTAATGGCAGAGATCACCACTACACTT 420
Query 421 AATCCTCCTCAGGTTTCTCACCTCGCCGAAGCTGCTCTCGGCTGTTTCAAGGACGAGATG 480
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 421 AATCCTCCTCAGGTTTCTCACCTAGCCGAAGCTGCCCTCGGCTGTTTCAAGGACGAGATG 480
Query 481 CTTCACTTGCTTACCAAGAAACGTGTTGACCTAAACCAAATCAACTTCTCAAACCATAAC 540
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CTTCACTTGCTCACCAAGAAACGTGTTGACCTAAACCAAATCAACTTTTCAAACCATAAC 540
Query 541 CCTAACGCTAACCCAAACAACTTTAACCAGATTGCTGATAATGAAGCTGGTAAGATAAAG 600
|||||| | | |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 541 CCTAAC-C---C--AAACAACTTTCACGAGATTGCTGATAATGAAGCTGGTAAGATAAAG 594
Query 601 ATG-AGTGGTTTGGACCATGGGAATGGGATAATGAAACTATGGGACATGGGTAATGGATT 659
||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 ATGGA-TGGTTTGGACCATGGGAATGGGATAATGAAGTTATGGGACATGGGTAATGGATT 653
Query 660 CTCGTATGGATCCTCTTCGTCGTCGTTTGGAAATGAAGAAAGGAATGATGGATCGGCGTC 719
||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||
Sbjct 654 CTCATATGGATCCTCTTCGTCTTCGTTTGGGAATGAAGAAAGAAATGATGGATCAGCGTC 713
Query 720 TCCTGCCGTTGCGGCTTGGAGAGGTCACGGAGGGATACGTACGGCGGTGGCTGAAACCGC 779
|||||||||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct 714 TCCTGCCGTTGCAGCTTGGAGGGGTCACGGAGGAATACGTACCGCGGTAGCTGAAACCGC 773
Query 780 GGCGGCCGAGGAAGAGGAGAGGAGGAAGCTGAAGGGAGAAGTGGTtgatcaagaggagat 839
||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGCAGCGGAGGAGGAGGAGAGAAGGAAGCTGAAGGGAGAAGTGGTTGATCAAGAGGAGAT 833
Query 840 tggatctgaaggaggaagaggagatggaatgatgatgatgatgaggaaCCATCATCAACA 899
|||||||||||||||||||||||||||||||| |||||||| | | ||||||||||| ||
Sbjct 834 TGGATCTGAAGGAGGAAGAGGAGATGGAATGACGATGATGA-G-G-AACCATCATCATCA 890
Query 900 ACAACAACATGTGTTTAATGTGGATAATGTCTTGTGGGATTTACAAGCTGATGATCTCAT 959
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCAACA---TGTGTTTAATGTGGATAATGTCTTGTGGGATTTACAAGCTGATGATCTCAT 947
Query 960 CAATCATATGGTTTGA 975
||||||||||||||||
Sbjct 948 CAATCATATGGTTTGA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5