BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331944
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56330.1 | Symbols: ATACA8, ACA8 | alpha carbonic anhydrase ... 1182 0.0
> AT5G56330.1 | Symbols: ATACA8, ACA8 | alpha carbonic anhydrase
8 | chr5:22813768-22816162 FORWARD LENGTH=1053
Length=1053
Score = 1182 bits (640), Expect = 0.0
Identities = 786/853 (92%), Gaps = 24/853 (3%)
Strand=Plus/Plus
Query 74 CACCTCCTAAACCTAAGCCTGCACCAGCACCAACACCAGC---ACCTAAACCTAAACCAG 130
||||||||||||||||||| ||||||||||| ||||| | |||||| || |||||||
Sbjct 212 CACCTCCTAAACCTAAGCCCGCACCAGCACCTACACCTCCTAAACCTAAGCCCAAACCAG 271
Query 131 CACCT---CCTAC--A-CCTAAGCCTGcaccagcaacaacaccagaacctaaacctaaac 184
||||| ||| | | |||||||| |||||||| | ||||| ||||||||||| |
Sbjct 272 CACCTACACCTCCTAATCCTAAGCCCACACCAGCACCTACACC---TCCTAAACCTAAGC 328
Query 185 ctgcacctaaacctgcaccagcaccaacaccagcacctaaacctaaacctgcacccaaac 244
||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 329 CTGCACC---A---GCACCAGCACCAACACCAGCACCGAAACCTAAACCTGCACCTAAAC 382
Query 245 ctgcaccaGGTGGAGAAGTTGAGGACGAAACCGAGTTTAGCTACGAGATGAAAGGAAACA 304
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 383 CAGCACCAGGTGGAGAAGTTGAGGACGAAACCGAGTTTAGCTACGAGACGAAAGGAAACA 442
Query 305 AGGGGCCAGCGAAATGGGGAACACTACATGCAGAGTGGAAAATGTGTGGAATAGGCAAAA 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 443 AGGGGCCAGCGAAATGGGGAACACTAGATGCAGAGTGGAAAATGTGTGGAATAGGCAAAA 502
Query 365 TGCAATCTCCGATTGATCTTAGTGACAAAAATGTCGTAGTTAGTAATAAATTTGGATCT- 423
|||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||| |
Sbjct 503 TGCAATCTCCTATTGATCTTCGGGACAAAAATGTGGTAGTTAGTAATAAATTTGGAT-TG 561
Query 424 CTTCGTAGCCAGTATCTGCCTTCTAATACCACCATCAAAAACAGAGGTCATGATATCATG 483
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 562 CTTCGTAGCCAGTATCTGCCTTCTAATACCACCATTAAGAACAGAGGTCATGATATCATG 621
Query 484 TTGAAATTTAAAGGAGGGAATAAAGGTATTGGTGTCACCATCCGTGGTATC-AAATATCA 542
|||||||| |||||||| |||||||||||||||||||| |||||||||| | | ||||||
Sbjct 622 TTGAAATTCAAAGGAGGAAATAAAGGTATTGGTGTCACTATCCGTGGTA-CTAGATATCA 680
Query 543 ACTTCAACAACTTCATTGGCACTCACCTTCCGAACATACAATCAATGGCAAAAGGTTTGC 602
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 681 ACTTCAACAACTTCATTGGCACTCTCCTTCCGAACATACAATCAATGGCAAAAGGTTTGC 740
Query 603 GCTTGAGGAACATTTGGTTCATGAGAGCAAAGATAAACGCTACGCTGTTGTCGCTTTCTT 662
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 741 GCTAGAGGAACACTTGGTTCATGAGAGCAAAGATAAACGCTACGCTGTTGTCGCATTCTT 800
Query 663 ATACAAACTTGGAGCATCTGACCCTTTTCTCTTTTCGTTAGAAAAACAATTGAAGAAGAT 722
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 801 ATACAATCTCGGAGCATCTGACCCTTTTCTCTTTTCGTTGGAAAAACAATTGAAGAAGAT 860
Query 723 AACTGATACACATGCGTCCGAGGAACATATTCGCACTGTGTCAAGTAAACAAGTGACGCT 782
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 861 AACTGATACACATGCGTCCGAGGAACATATTCGCACTGTGTCAAGTAAACAAGTGAAGCT 920
Query 783 TCTCCGTGTGGCTGTACACGATGCTTCAGATTCAAATGCGAGGCCGCTTCAAGCAATCAA 842
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 921 TCTCCGTGTGGCTGTACACGATGCTTCAGATTCAAATGCCAGGCCGCTTCAAGCAGTCAA 980
Query 843 TAAGCGCATGGTGTATTTATACAAACCAAAAGTTAAGTTAATGAAGAAATA-TCGTAATA 901
|||||||| ||| ||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 981 TAAGCGCAAGGTATATTTATACAAACCAAAGGTTAAGTTAATGAAGAAATACT-GTAATA 1039
Query 902 CAAGTTTTTACTA 914
||||| ||||||
Sbjct 1040 TAAGTTCTTACTA 1052
Score = 195 bits (105), Expect = 9e-49
Identities = 205/249 (82%), Gaps = 23/249 (9%)
Strand=Plus/Plus
Query 1 ATGAAGATATCATCACTAGGATGGGTCTTTGTCCTTATCTTCATCTCTATTACCATTGTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGATATCATCACTAGGATGGGTCTTAGTCCTTATCTTCATCTCTATTACCATTGTT 60
Query 61 TCGAGTGCACAAGCACCT---CCT---AAACCTAAGCCTGCACCAGCACCAACACCAGC- 113
|||||||||| ||||||| ||| ||||||||||||||||||||||| ||||| |
Sbjct 61 TCGAGTGCACCAGCACCTAAACCTCCTAAACCTAAGCCTGCACCAGCACCTACACCTCCT 120
Query 114 A--CCTAAACCTAAACCAGCACCTCCTACA-CCTAAGCCTGcaccagcaacaacaccaga 170
| ||||| || | |||||||||| | || ||||| ||| | ||| ||| |||||
Sbjct 121 AAACCTAAGCCCACACCAGCACCTAC-ACCTCCTAAACCT--A--AGCC-CAA-ACCAGC 173
Query 171 acctaaacctaaacctgcacctaaacctgcaccagcaccaacaccagcacctaaacctaa 230
||||| |||| ||| |||||| |||||||||||||| ||||| | | |||||||||
Sbjct 174 ACCTACACCT---CCTAAACCTAAGCCTGCACCAGCACCTACACCT-C-C-TAAACCTAA 227
Query 231 acctgcacc 239
|| |||||
Sbjct 228 GCCCGCACC 236
Score = 76.8 bits (41), Expect = 3e-13
Identities = 60/68 (88%), Gaps = 6/68 (9%)
Strand=Plus/Plus
Query 74 CACCTCCTAAACCTAAGCCTGCACCAGCACCA--AC-A-C-C-AGCACCTAAACCTAAAC 127
|||||||||||||||||||||||||||||||| || | | | |||||| ||||||||||
Sbjct 311 CACCTCCTAAACCTAAGCCTGCACCAGCACCAGCACCAACACCAGCACCGAAACCTAAAC 370
Query 128 CAGCACCT 135
| ||||||
Sbjct 371 CTGCACCT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5