BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331952
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56460.1 | Symbols: | Protein kinase superfamily protein | ... 1938 0.0
> AT5G56460.1 | Symbols: | Protein kinase superfamily protein
| chr5:22865110-22867996 FORWARD LENGTH=1756
Length=1756
Score = 1938 bits (1049), Expect = 0.0
Identities = 1155/1208 (96%), Gaps = 0/1208 (0%)
Strand=Plus/Plus
Query 1 ATGGGTAATTGTTGGTGTAGATTTGAGCCCTTAAATCACAGAGTTTCTGCAAACGCTAAA 60
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 400 ATGGGTAACTGTTGGTGTAGATTTGAGCCCTTAAACCACAGAGTTTCTGCAAACGCTAAA 459
Query 61 TCAGAGTCACCAAAAGAACAGAGTCCAACAGTAGAAGATAAACATATTAAGGAAGTTCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TCAGAGTCACCAAAAGAACAGAGTCCAACAGTAGAAGATAAACATATTAAGGAAGTTCAA 519
Query 121 AAGCTGCCATCAAATCCAAAAGAAGTAGAAGATCTAAGACGTGACTCAGCAGCGAATCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AAGCTGCCATCAAATCCAAAAGAAGTAGAAGATCTAAGACGTGACTCAGCAGCGAATCCT 579
Query 181 CTGATAGCTTTCACATACGATGAGCTTAAGAACATTACAGGTAATTTCAGACAAGACAGA 240
|| ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 580 CTTATAGCTTTCACATACGAAGAGCTTAAGAACATTACAAGTAATTTTAGACAAGACAGA 639
Query 241 GTTCTCGGTGGTGGTGGATTTGGAAGTGTTTACAAAGGTTTTATAAAAGAGGATTTGGGT 300
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 640 GTTCTTGGTGGTGGTGGATTTGGAAGTGTCTACAAAGGGTTTATAAAAGAGGATTTGGGT 699
Query 301 GATCAACAAGTTCCTCAACCACTTCCTGTTGCTGTTAAAGTTCATGACGGCGATAATAGC 360
|||||| |||||||| |||||||||||||||| |||||||||||||| || |||||||||
Sbjct 700 GATCAAGAAGTTCCTGAACCACTTCCTGTTGCCGTTAAAGTTCATGATGGTGATAATAGC 759
Query 361 TTTCAGGGCCACAGAGAATGGCTGGCAGAGGTGATATTCTTGGGGCAGCTTTCACATCCA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TTTCAGGGTCACAGAGAATGGCTGGCAGAGGTGATATTCTTGGGGCAGCTTTCACATCCA 819
Query 421 AACTTAGTGAAATTGATCGGTTATTGCTGCGAGGATAATCACAGGGTGCTAATTTACGAG 480
||||||||||||||||||||||||||||| |||||||||||| | |||||||| || |||
Sbjct 820 AACTTAGTGAAATTGATCGGTTATTGCTGTGAGGATAATCACCGAGTGCTAATCTATGAG 879
Query 481 TACATGGCTCGTGGTAGCGTGGAGAATAATCTTTTCTCAAGAGTGTTACTTCCTCTTTCA 540
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 880 TACATGGCTCGTGGTAGCGTGGAGAACAATCTTTTCTCAAGAGTGTTGCTTCCTCTTTCA 939
Query 541 TGGGCAATTAGAATGAAGATTGCTTTTGGAGCTGCGAAAGGACTTGCCTTTCTTCATGAA 600
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 940 TGGGCAATAAGAATGAAGATTGCTTTCGGAGCTGCGAAAGGACTTGCCTTTCTTCATGAA 999
Query 601 GCAAAGAAACCCGTCATTTATCGCGATTTCAAAACCTCCAACATTCTTCTAGATATGGAA 660
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1000 GCAAAGAAACCCGTCATTTATCGCGATTTCAAAACTTCGAACATTCTTCTAGATATGGAT 1059
Query 661 TACAATGCCAAATTATCTGACTTCGGACTTGCTAAAGACGGTCCTGTAGGAGATAAATCC 720
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1060 TACAACGCCAAATTATCTGATTTTGGACTTGCTAAAGACGGTCCTGTAGGAGATAAATCC 1119
Query 721 CATGTTTCCACTCGCATAATGGGAACTTATGGCTATGCAGCTCCTGAATACATCATGACA 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CATGTTTCCACTCGTATAATGGGAACTTATGGCTATGCAGCTCCTGAATACATCATGACA 1179
Query 781 GGTCATTTGACACCGGGGAGTGATGTGTATAGCTTCGGTGTAGTTCTGTTAGAGCTTCTA 840
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1180 GGGCATTTGACACCGGGGAGTGATGTGTATAGTTTCGGTGTAGTTCTGTTAGAGCTTCTT 1239
Query 841 ACTGGAAGAAAATCATTAGACAAGTCACGGCCTACGCGTGAGCAAAACCTCATAGATTGG 900
|| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1240 ACGGGAAGAAAATCATTAGACAAATCACGGCCAACACGTGAGCAAAACCTCATAGATTGG 1299
Query 901 GCTCTTCCATTGTTGAAGGAGAAGAAGAAAGTCTTGAACATTGTAGACCCAAGAATGAAC 960
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1300 GCTCTTCCATTGTTGAAGGAGAAGAAGAAAGTCTTGAACATTGTAGACCCAAAAATGAAC 1359
Query 961 TGTGAATACCCGGTAAAAGCGGTTCAAAAGGCTGCAATGTTAGCTTACCATTGCCTGAAC 1020
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TGTGAGTATCCGGTTAAAGCGGTTCAAAAGGCTGCAATGTTAGCTTACCATTGCCTGAAC 1419
Query 1021 CGGAACCCGAAGGCTAGGCCTTTAATGCGGGATATTGTGGATTCTTTGGAGCCTCTTCAG 1080
|| |||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1420 CGTAACCCGAAGGCTCGGCCTTTAATGCGTGACATTGTTGATTCTTTGGAGCCTCTTCAG 1479
Query 1081 GCCACAGAAGAAGAGGCTTTACTAGTCCCTACTGTTCAGAAAGCAGTAGTTACCATAATC 1140
||||||||||| |||||||||||||||||| ||||||||||||||||| |||| || |||
Sbjct 1480 GCCACAGAAGAGGAGGCTTTACTAGTCCCTCCTGTTCAGAAAGCAGTAATTACTATTATC 1539
Query 1141 GACGAAATGCCTaagaatggattgaagaaagttgaagaattgaagaaggttgaagaattg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1540 GACGAAATGCCTAAGAATGGATTGAAGAAAGTTGAAGAATTGAAGAAGGTTGAAGAAGTG 1599
Query 1201 aagaaggt 1208
||||||||
Sbjct 1600 AAGAAGGT 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5