BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg331954

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56480.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   494    3e-139


> AT5G56480.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:22870326-22870817 
REVERSE LENGTH=342
Length=342

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 316/340 (93%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  1    ATGAAAGAACAGATCTTTTACCAGTTTCTAGTCGTAATCATGTTGTTGTCATCATCTCAA  60
            |||||||||||||| ||||  |||||| |||||||||| |||||||||||||||||||||
Sbjct  1    ATGAAAGAACAGATATTTTGTCAGTTTTTAGTCGTAATGATGTTGTTGTCATCATCTCAA  60

Query  61   ATTCAGGGGGAGAGATGTGATGATTCAGGCATAGAATTTCTGAGGGGATGTCCAGATTCT  120
            |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct  61   ATTCAGGGGGAGAGATGTAATGATTCAGGCATCGAAGTTCTGAGGGGATGTCCAGATTCT  120

Query  121  ATCGACAAGGAGCTGCCAACTCCACCAAGACCATCCCAAGATTGTTGCACTCTTGTCCGA  180
            ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct  121  ATCGACAAGGAGCTGCCAACTCCGCCAAGACCATCCCAAGGTTGTTGCACTCTTGTCCGA  180

Query  181  ATCATCGGGATGAAATGCATATGCGAAGTCATCAATAAGAGAA-TCGAAGCCGTCATTGA  239
            |||||||||||| ||||  |||||||||||||||||||| ||| ||||||||| ||||||
Sbjct  181  ATCATCGGGATGGAATGTGTATGCGAAGTCATCAATAAG-GAAATCGAAGCCGCCATTGA  239

Query  240  TATGCAAAAGCTAGTCAATGTCGCGGCTGCTTGTGGCAGCCCTCTTGCTCCTGGTTCACA  299
            ||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||
Sbjct  240  TATGCAAAAGCTAGTCAATGTCGCGGCTGCTTGTGGCCGTCCACTTGCTCCTGGCTCACA  299

Query  300  TTGCGGAAGCTACCTAGTTCCCGGTGGCATGGTGAGACAT  339
             |||||||| ||||||||||||||||||||| | ||||||
Sbjct  300  ATGCGGAAGTTACCTAGTTCCCGGTGGCATGATTAGACAT  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5