BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332000
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57035.1 | Symbols: | U-box domain-containing protein kinas... 3659 0.0
> AT5G57035.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:23080661-23083988 FORWARD LENGTH=2621
Length=2621
Score = 3659 bits (1981), Expect = 0.0
Identities = 2244/2373 (95%), Gaps = 9/2373 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGTGATGACGAACAAGTTCTTCGAATCAATCGGTGGAGCTCCGTCGTATACTTCA 60
|||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||
Sbjct 83 ATGGTGGTGATGACGAACAAATTCTTCGAATTAATCGGCGGAGCTCCGTCGTATTCTTCA 142
Query 61 GTTTCCGTCGCCGTTAAAGGATCCGTCGGTGACGCCGTAGGAGGAACTGCTAGTCGTCGT 120
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 GTATCCGTCGCTGTTAAAGGATCCGTCGGTGACGCCGTAGGAGGAACTGCTAGTCGTCGT 202
Query 121 GCTCTTCGTTGGACCATTGAAAATTTCCTTCCTAAAATCGATCGATTAGTTCTTGTTCAT 180
|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 203 GCTCTTCGTTGGACAATCGAAAATTTCCTTCCTAAAATCGATAGATTAGTTCTTGTTCAT 262
Query 181 GTCATGCCTACCGTCACAAGTATTCCATCTCCTTCTGGATCGAAGATTCCAGTAGAGGAA 240
||||||||||| || || | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 263 GTCATGCCTACAGTTACTACTATTCCATCTCCTTCTGGATCGAAGATTCCAATAGAGGAA 322
Query 241 TTGGAAGAGAGTGTTGTGTCGATGTATAAAAGAGATTTGAGAAAAGAATATGAACAGGTT 300
||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||| |||
Sbjct 323 TTGGATGAGAGTGTTGTGTCTATGTATAAACGAGATTTGAGAAAAGAATTTGAACAAGTT 382
Query 301 TTTGTTCCGTTTAAGAGGATCTGCAAATCAAACAAAGTTGAGACTTTGTTGTTGGAACAT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 383 TTTGTTCCGTTTAAGAGGATCTGCAAATCCAACAAAGTTGAGACTTTGTTGTTGGAACAT 442
Query 361 CATGATCCTGCAAAGGCACTTTTGAAGTATATGTTAGATTCTGAGGTTGAGTGTTTAGTG 420
||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||
Sbjct 443 CATGATCCTGCAAAGGCTCTTTTGAAGTATATGTCAGATACTGATGTTGAGTGTTTAGTG 502
Query 421 ATTGGCTCTTGCTCTTCAAATTTCCTCACAAGGAAAAAGGGACAAGAAATGCCATTAACG 480
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 503 ATTGGCTCTTGCTCTTCTAATTTCCTCACAAGGAAAAAAGGACAAGAAATGCCATTAACG 562
Query 481 GTACTAGGAGAAGCTCCAGAGACATGTGAGATCTTTGTTGTTTGCAAAGATAGAATCTTA 540
|| ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 563 GTGCTAGGAGAAGCTCCAGAGACATGTGAGATATATGTTGTTTGTAAAGATAGAATCTTA 622
Query 541 ACCAAATCGACCAATCAGTTTACCGCAGATTCATCTTCTAGTTTCCGTATACCCGAAGGA 600
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 623 ACCAAATCGACGAATCAGTTTACCGCAGATTCATCATCTAGTTTCCGTATACCAGAAGGA 682
Query 601 GCTGAAGCTTATACTGAATCTTTCAGTCGCTCACGCTCTGAGAAGACGGGGTTGTCTGCT 660
|||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 683 GCTGAAGCTTATACAGAATCTTTCAGTCGCACACGCTCTGATAAGACAGGGTTGTCTGCT 742
Query 661 TCATCCATATCATCTTCAGGCAGGATGCA-AAATGGAAGGCCTGCCTCTTTACCGCATAG 719
||||| ||| ||||||||||||||||| | || ||||||||||| |||||||||||||||
Sbjct 743 TCATCTATAACATCTTCAGGCAGGATG-AGAATTGGAAGGCCTGGCTCTTTACCGCATAG 801
Query 720 TCATCCAACCTCTCGAGTGTTTTCTGATGCACAG---TCTTCAACTGAT-TTCGGTTTGG 775
|||||| ||||||||||||| ||||||||||||| |||||||||||| || | |||||
Sbjct 802 TCATCCGACCTCTCGAGTGTATTCTGATGCACAGTCTTCTTCAACTGATATT-GTTTTGG 860
Query 776 CCGATGACGAACACACCCGTTCTATCCTTAGACATAGTACTGTTTCCAGTAGTCAAAGAC 835
||||||||||||| |||||||||||||| |||||||||||||||| |||| ||| ||
Sbjct 861 TCGATGACGAACACTGTCGTTCTATCCTTAGGCATAGTACTGTTTCCACTAGTAAAATAC 920
Query 836 ATTTGGATCCTAGACCTCACATAAAAACACCAAAGTCAGGTGTAAAAGCTGAGGTAGAGA 895
| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 921 AGATGGATCCTAGACCTCACTTAAAAACACCAAAGTCAGGTGTAAGAGCTGAGGTAGAGC 980
Query 896 AGCTAAGGAAAGAAGTACAAACCACTCTTTCCATGTACAAACAGGCTTGTGAAGAGCTAG 955
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 981 AGCTAAGGAAAGAAGTGCAAACCACTCTTTCCATGTACAAACAAGCTTGTGAAGAGCTAG 1040
Query 956 TTCATAAACAAACGCAGGTCCAGTCTCTTTCCTCTGAGTGTATTAAAGAAACGGAAAGGG 1015
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1041 TTCATAAACAAACACAGGTCCAGTCTCTTTCCTCTGAGTGTATCAAAGAAACAGAAAGGG 1100
Query 1016 TCATCACTGCTCTGgaaaaagaagaaatgcggaggaaagcagcagcagaagagaaagaaa 1075
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1101 TCATCACTGCTCTGGAAAAAGAAGAAATGCGAAGGAAAGCAGCAGCAGAAGAGAAAGAAA 1160
Query 1076 agcatctaaaagctgtaaaagaagtcgaggaagcaaaaTCAATGCTAGCCAAAGAATTCT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1161 AGCATCTAAAAGCTGTAAAAGAAGTCGAGGAAGCAAAATCAATGCTAGCCAAAGAGTTCT 1220
Query 1136 GCGAGAGGCAATTAGCTGAGCTAGATGCCCTCAAGCAGTCCATTGAGAAACAGAAAGTCA 1195
|||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1221 GCGAGAGGCAATTAGCCGAGCTAGATGCTCTCAAACAGTCCATAGAGAAACAGAAAGTCA 1280
Query 1196 TTGAGCAACTCTTCTTGAGAGACGGGAGGTACAGAAAGTACACCAAAGAAGAAATAGCTG 1255
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1281 TTGAGCAACTCTTCTTGAGAGACGGGCGATACAGAAAGTACACAAAAGAAGAAATAGCTG 1340
Query 1256 TAGCTACAGATAATTTTTCTTCCCGTAAAATAATCGGCGAAGGAGGATACGGAAAAGTAT 1315
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1341 CAGCTACAGATAATTTCTCTTCCCGTAAAATAATCGGCGAAGGAGGATATGGAAAAGTAT 1400
Query 1316 ACAAATGCAGTCTCGATCATACCCCAGTAGCTCTTAAAGTTCTCAAACCTGATTCAGTCG 1375
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1401 ACAAATGCAGTCTTGATCATACCCCAGTAGCTCTTAAAGTTCTCAAACCTGATTCTGTTG 1460
Query 1376 AAAAGAAAGAGGAATTCTTAAAAGAGATCTCTGTCTTAAGCCAGCTTCGTCATCCCCACG 1435
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1461 AAAAGAAAGAGGAATTCTTGAAAGAGATCTCAGTCTTAAGCCAGCTTCGTCATCCCCATG 1520
Query 1436 TGGTTCTTCTACTCGGTGCTTGTCCTGAAAATGGCTGCCTTGTTTACGAGTACATGGAAA 1495
|||||||||| || |||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1521 TGGTTCTTCTCCTTGGTGCTTGTCCTGAAAATGGATGCCTTGTCTATGAGTACATGGAAA 1580
Query 1496 ATGGTAGCTTAGATTGTCACATCTCCCCCAAAAAAGGGAAACCATCTCTCTCATGGTTTA 1555
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1581 ATGGTAGCTTAGATTGTCACATCTCTCCCAAAAAAGGGAAACCATCTCTCTCATGGTTTA 1640
Query 1556 TCAGATTCCGAATCATCTATGAAACCGCTTGTGGTTTAGCTTTCCTCCACAACTCTAAAC 1615
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1641 TCAGATTCCGAATCATCTATGAAACAGCTTGTGGTTTAGCTTTCCTCCACAACTCTAAGC 1700
Query 1616 CTGAGCCCATCGTCCACCGTGACCTCAAACCAGGCAACATTCTCTTAGACAGAAACTTTG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 CTGAGCCCATCGTCCACCGTGACCTCAAACCAGGCAACATTCTCTTAGACAGAAACTTTG 1760
Query 1676 TTAGCAAAATCGGCGACGTTGGACTCGCAAAACTCATGTCAGAAGAAGCACCAGACAGTC 1735
| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1761 TCAGCAAAATCGGTGACGTTGGACTCGCAAAACTCATGTCAGACGAAGCACCAGACAGTG 1820
Query 1736 TCACAGTTTACAGAAACTCGATTATCGCCGGTACACTCTACTACATGGACCCGGAATATC 1795
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1821 TGACGGTTTACAGAAACTCGATTATCGCCGGTACACTCTACTACATGGACCCGGAATACC 1880
Query 1796 AAAGAACCGGCACAATCAGACCGAAATCAGATCTTTACGCATTTGGAATCATAATTCTCC 1855
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 AACGAACCGGCACAATCAGACCGAAATCAGATCTTTACGCATTTGGAATCATAATTCTCC 1940
Query 1856 AGCTTTTAACCGCTCGACATCCCAACGGTCTTCTTTTCTGCGTTGAAGACGCAGTAAAGA 1915
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1941 AGCTTTTAACCGCTCGACATCCCAACGGTCTTCTTTTCTGCGTTGAAGATGCAGTAAAGA 2000
Query 1916 GAGGTTGTTTTGAAGATATGTTAGATGGATCAGTCAAAGATTGGCCCATAGCCGAAGCGA 1975
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2001 GAGGCTGTTTTGAAGATATGTTAGATGGATCAGTCAAAGACTGGCCCATAGCCGAAGCGA 2060
Query 1976 AAGAACTAGCTCGCATTGCAATCAAGTGTTCGCAGCTCAAATGCAGAGACAGACCAGATC 2035
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2061 AAGAACTAGCTCGCATTGCAATCAGGTGTTCGCAGCTCAAATGCAGAGACAGACCAGATC 2120
Query 2036 TCAGCACACAAGTCTTGCCTGCTCTCAAACGGATTCTTGAATCTGCAAATAGTAGACTCA 2095
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2121 TTAGCACACAAGTCTTGCCTGCTCTCAAACGTATTCTTGAATCTGCAAATAGTAGACTCA 2180
Query 2096 AGACAGAACAAGCTAATGTTCGACCACCAACTCATTATTACTGTCCAATTCTTAAGGAAA 2155
|||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||||
Sbjct 2181 AGACAGAACAAGCTAACGCACGAGCACCAACTCACTATTACTGTCCAATTCTTAAGGAAA 2240
Query 2156 TAATGGAAGATCCACAGATAGCAGCAGATGGATTCACTTACGAAGGAAAAGCAATAAAGG 2215
|||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||| |
Sbjct 2241 TAATGGAAGATCCACAAATAGCAGCAGATGGATTCACATACGAACGAAAAGCGATAAAAG 2300
Query 2216 CATGG-TTCCAAAAACATCAAAATGTGTCTCCCGTGACTAAGCATCGGCTAAAAAATTCT 2274
|||| ||| ||||||||||| |||||||||| || |||||||||||||| ||| |||||
Sbjct 2301 AATGGATTC-AAAAACATCAAGATGTGTCTCCTGTTACTAAGCATCGGCTCAAACATTCT 2359
Query 2275 GATCTTACACCGAACCACACTCTCAGATCGGCTATACAAGAGTGGCGATCTCGTTCACGC 2334
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2360 GATCTTACACCGAACCACACTCTCAGATCGGCTATACGAGAGTGGCGATCTCGTTCACGC 2419
Query 2335 TTAGACCTCTCCACTACTCTTGGCTCCTATTGA 2367
||||||||||||||||||||||||||||| |||
Sbjct 2420 TTAGACCTCTCCACTACTCTTGGCTCCTACTGA 2452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117519475845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5