BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332011
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57140.1 | Symbols: ATPAP28, PAP28 | purple acid phosphatase... 1637 0.0
> AT5G57140.1 | Symbols: ATPAP28, PAP28 | purple acid phosphatase
28 | chr5:23149880-23151370 FORWARD LENGTH=1240
Length=1240
Score = 1637 bits (886), Expect = 0.0
Identities = 1102/1206 (91%), Gaps = 15/1206 (1%)
Strand=Plus/Plus
Query 1 ATGAAATCTTCAATCGGAAACTGGAAGCACACTGTTCTCTACTTAACCCTAATCATATCT 60
||||| | |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 47 ATGAATTGTTCAATCGGAAACTGGAAACACACTGTTCTCTACTTAACCCTAATCGTATCT 106
Query 61 CTTGTCTACTTCATCGAATTACTAATCTCACACAAATTACACATCAACCATAACAAAATC 120
||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||
Sbjct 107 CTTCTCTACTTCATCGAATCCCTAATCTCACACAAATTACACATCAACTACAACAAAATC 166
Query 121 CACCTGAAAAGGTCTCCGAATCTTCCTCTCCGATTCCGTGACGATGGCACCTTCAAAATC 180
| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 167 CGCCTGAAAAGATCTCCGAATCTTCCTCTACGATTCCGTGACGATGGCACATTCAAAATC 226
Query 181 CTCCAGGTCGCTGATATGCATTTCGGAATGGGGATTATTACTCGGTGTAGAGATGTGTTG 240
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 227 CTCCAGGTCGCGGATATGCATTTCGGAATGGGGATGATTACTCGATGTAGAGATGTGTTG 286
Query 241 GATTCTGAATTCGATTATTGTTCTGATCTTAATACTACTCGGTTTATTCGGAGGATGATT 300
||||| |||||||| |||||||||||||| || |||||||||||| |||| |||||||||
Sbjct 287 GATTCAGAATTCGAATATTGTTCTGATCTCAACACTACTCGGTTTCTTCGTAGGATGATT 346
Query 301 GAAGCTGAGAGACCTGATTTGATCGCTTTTACGGGGGATAACATATTTGGATCAAGTACC 360
||| ||||||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct 347 GAATCTGAGAGACCTGATTTGATTGCTTTCACTGGGGATAATATATTTGGATCAAGTACT 406
Query 361 ACTGACGCGGCTGAATCTCTTATTCAAGCTATTGGTCTAGCTATTGAATATGGAATCCCA 420
||||| || |||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 407 ACTGATGCAGCTGAATCTCTTCTTGAAGCTATTGGTCCAGCTATTGAATATGGAATCCCA 466
Query 421 TGGGCTGCCATTTTAGGAAATCATGACCAAGAATCTACTTTGAACCGTGAAGAGTTGATG 480
|||||||| ||||||||||||||||||| |||||||||||||||||| ||| ||||||
Sbjct 467 TGGGCTGCTGTTTTAGGAAATCATGACCATGAATCTACTTTGAACCGTTTAGAATTGATG 526
Query 481 ACTTTCCTTTCTCTTATGGATTTTTCTGTCTCTCAAGTCAATCCACCTGTTGAAGATGAC 540
||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 527 ACTTTCCTTTCTCTTATGGATTTTTCTGTTTCTCAAATCAATCCACTTGTTGAAGATGA- 585
Query 541 TCTAATCAAATCAAAGGAGGCGCAATGAGATTAATCGATGGCTTTGGGAATTACCGCCTC 600
|| | | ||||||| ||||||| ||||||||||| |||||||||||||| |
Sbjct 586 ---AA-C---T-AAAGGAGATACAATGAGGTTAATCGATGGATTTGGGAATTACCGAGTG 637
Query 601 AGAGTGTACGGTGCTCCTGGTTCCGTGCTT-GCTAATAGCACTGTCTTTGACCTCTTCTT 659
||||| ||||||||||||||||| ||| || || ||||| || |||||||| ||||||||
Sbjct 638 AGAGTTTACGGTGCTCCTGGTTCTGTG-TTGGCGAATAGTACCGTCTTTGATCTCTTCTT 696
Query 660 TTTTGACAGTGGAGATAGAGAAATAGTCCAAGGTAAACGAACTTATGGATGGATCAAGGA 719
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 697 TTTTGATAGTGGAGATAGAGAAATAGTACAAGGTAAACGAACTTATGGATGGATCAAGGA 756
Query 720 ATCACAACTTCGTTGGCTTCAAGATACTTCTATACAGGTTCATAACCAGAGGATTC-TCG 778
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | |
Sbjct 757 ATCACAACTTCGTTGGCTTCAAGATACTTCTATACAGGGTCATAGCCAGAGGATTCAT-G 815
Query 779 GTAATCCGCCAGCGTTAGCCTTCTTCCACATCCCTATCTTAGAAGTACGTGATCTGTGGT 838
||||||||||||||||||||||||||||||||| || || ||||| || || |||||||
Sbjct 816 TTAATCCGCCAGCGTTAGCCTTCTTCCACATCCCAATATTGGAAGTTCGGGAACTGTGGT 875
Query 839 ACACGCCCTTTATCGGCCAGTTTCAGGAAGGAGTGGCATGCTCCATTGTTCAGTCAGGAG 898
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 876 ACACGCCCTTTATCGGTCAGTTTCAGGAAGGAGTGGCATGCTCTATTGTTCAGTCTGGAG 935
Query 899 CCTTACAGACCTTTGTGTCCTTGGGAAATGTAAAAGCTGCGTTCATGGGACACGACCATG 958
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 936 TCTTACAGACATTTGTGTCAATGGGAAATGTAAAAGCTGCGTTCATGGGACACGACCATG 995
Query 959 TCAATGATTTCTGTGGAAATCTAAAAGGGATATGGTTTTGTTACGGTGGAGGATTCGGAT 1018
| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 996 TTAATGATTTCTGTGGAACTCTAAAAGGGGTATGGTTTTGTTACGGTGGAGGATTCGGAT 1055
Query 1019 ACCATGCTTATGGAAGACCAAATTGGCACAGAAGAGCAAGAGTGATAGAGGCTAAGCTAG 1078
|||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1056 ACCATGCTTATGGACGACCAAATTGGCATAGAAGAGCAAGAGTGATAGAAGCTAAGCTTG 1115
Query 1079 GAAAAGGAAGAGACACATGG-ACAGGAATCGAACTTATCAAGACGTGGAAACGTCTAGAT 1137
| |||||||||||||||||| | ||||||| ||||||||||||| ||||||||||| ||
Sbjct 1116 GGAAAGGAAGAGACACATGGGA-AGGAATCAAACTTATCAAGACTTGGAAACGTCTTGAC 1174
Query 1138 GACCAAGACTTGAGCAAAATAGACGAACAAGTCCTATGGGAAACTTCCGACTCATTTCTG 1197
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1175 GACGAATACTTGAGCAAAATAGACGAACAAGTCTTATGGGAAACTTCCGACTCATTTCTG 1234
Query 1198 AAGTGA 1203
||||||
Sbjct 1235 AAGTGA 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5