BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332020
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57220.1 | Symbols: CYP81F2 | cytochrome P450, family 81, su... 2261 0.0
> AT5G57220.1 | Symbols: CYP81F2 | cytochrome P450, family 81,
subfamily F, polypeptide 2 | chr5:23187840-23189857 FORWARD
LENGTH=1723
Length=1723
Score = 2261 bits (1224), Expect = 0.0
Identities = 1407/1494 (94%), Gaps = 18/1494 (1%)
Strand=Plus/Plus
Query 1 ATGGATTACGTTTTGATTGTTTTGCCACTTGCATTGTTTCTCATAGCATACAAATTCTTA 60
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 72 ATGGATTACGTTTTGATTGTTTTGCCACTTGCATTGTTTCTCATAG----------C--- 118
Query 61 TACTACAAATTCTTATACTCATCCAAAACGCAGCGTTTCAATCTCCCACCTGGACCAACT 120
| ||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||
Sbjct 119 T--TACAAATTCTTATTCTCATCCAAAACGCAGGGCTTCAATCTCCCACCAGGACCAACT 176
Query 121 CCGTTTCCTATCGTCGGCAACCTCCACCTCGTGAAACCACCGGTCCACCGTCTCTTCCGC 180
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 177 CCGTTTCCTATCGTCGGCCATCTCCACCTAGTGAAACCACCGGTCCACCGTCTCTTCCGC 236
Query 181 CGCTTCGCAGAAAAATATGGCGACATCTTCTCCCTTCGTTACGGCTCACGCCAAGTCGTC 240
|||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 237 CGCTTCGCTGAAAAATACGGCGACATCTTCTCCCTCCGTTACGGCTCTCGCCAAGTCGTA 296
Query 241 GTGATCTCTTCATTGCCTCTTGTAAGAGAATCCTTCACCGGTCAAAACGACGTCATCTTA 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 297 GTGATCTCTTCATTGCCTCTCGTAAGAGAATCCTTCACCGGTCAAAACGACGTCATTTTA 356
Query 301 ACAAACAGACCACATTTTCTGACCGCTAAATACGTCGCTTACGATTACACCACGATCGGA 360
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 357 ACAAACAGACCGCATTTTCTGACCGCGAAATACGTCGCTTACGATTACACCACTATAGGA 416
Query 361 ACCGCAGCTTACGGTGACCATTGGCGTAATCTCCGACGTATTTGCTCTCTTGAGATCCTC 420
||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 417 ACCGCCGCTTACGGTGACCATTGGCGTAATCTCCGCCGTATTTGCTCTCTAGAAATCCTC 476
Query 421 TCCTCTAACCGTCTCACCGGATTCCTCTCCGTACGTAAAGACGAGATTCGACGGTTGCTC 480
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 477 TCCTCTAACCGTCTCACCGGATTCCTCTCCGTACGTAAAGACGAGATTCGTCGGCTGCTC 536
Query 481 ACGAAACTCTCACGTGAATATGATCACGGCCGTGTCGTTGAGCTTGAACCTCTTCTTGCA 540
|| ||||||||||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 537 ACAAAACTCTCACGTGAATATG---ACGGCCGTGTTGTCGAGCTTGAACCTCTTCTTGCA 593
Query 541 GATTTGACGTTCAATAATATTGTCCGCATGGTCACAGGGAGACGCTACTACGGAGACCAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GATTTGACGTTCAATAATATTGTCCGCATGGTCACAGGGAGACGCTACTACGGAGACCAG 653
Query 601 GTTCATAACAAGGAAGAAGCGAATCTATTCAAGAAACTAGTGACGGAGATCAACGACAAC 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 654 GTTCATAACAAGGAAGAAGCGAATCTATTCAAGAAACTAGTGACGGACATCAATGACAAC 713
Query 661 AGTGGTGCGAGCCATCCAGGAGATTATCTACCGATTCTTAAAGTGTTCGGACACAGCTAC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 714 AGTGGTGCGAGCCATCCAGGAGATTATCTACCGATTCTTAAAGTGTTCGGACACGGCTAC 773
Query 721 GAGAAGAAAGTGAAAGCACTCGGTGAAGCCATGGACGCTTTCTTACAGCGACTGCTCGAT 780
||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 774 GAGAAAAAAGTGAAAGCACTAGGCGAAGCCATGGACGCTTTCTTACAACGACTGCTCGAT 833
Query 781 GAATGTCGAAGAAATGGAGAGAGCAACACAATGGTTAGTCACTTGTTGTCTTTACAACTA 840
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GAATGTCGAATAAATGGAGAGAGCAACACAATGGTTAGTCACTTGTTGTCTTTACAACTA 893
Query 841 GACCAACCCAAGTATTACAGCGACGTCATCATCAAAGGCCTCATGCTCAGTATGATGCTA 900
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 894 GACCAACCCAAGTATTACAGTGACGTCATCATCAAAGGGCTCATGCTCAGTATGATGCTA 953
Query 901 GCGGGAACGGATACTGCGGCCGTAACATTGGAATGGGCGATGGCAAATTTATTAAAAAAC 960
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GCTGGAACGGATACTGCGGCCGTAACATTGGAATGGGCGATGGCAAATTTATTAAAAAAA 1013
Query 961 CCTGAAGTGTTGAAAAAGGCGAAAGCTGAGATAGACGAGAAGATTGGAGAAGAGCGATTG 1020
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 CCTGAAGTGTTGAAAAAGGCAAAAGCTGAGATAGACGAGAAGATTGGAGAAGAGAGATTG 1073
Query 1021 GTCGATGAACCAGACATTGCGAATCTTCCTTATCTCCAAAACATTGTTTCCGAGACTTTT 1080
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1074 GTCGATGAACCTGACATTGCGAATCTACCTTATCTCCAAAACATAGTTTCCGAGACTTTT 1133
Query 1081 CGGTTGTGTCCAGCCGCACCACTCCTTGTTCCACGTTCTCCTTCTGAAGATATCAAGATT 1140
|||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 1134 CGGTTGTGTCCAGCTGCACCACTTCTTGTTCCACGTTCTCCATCTGAAGATCTCAAGATT 1193
Query 1141 GGCGGATACGACATACCACGTGGCACGATCGTGCTAGTGAACGCTTGGGGCATCCATAGA 1200
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1194 GGTGGATACGACATACCACGTGGCACTATCGTGCTAGTGAACGCTTGGGCCATCCATAGA 1253
Query 1201 GACCCAAAACTCTGGGATGAGCCCGAGAGGTTTATGCCAGAGCGGTTCGAAAACGAAGAA 1260
||||||| ||| |||||||||||||||| ||||||||| |||||||||||| || |||||
Sbjct 1254 GACCCAAGACTTTGGGATGAGCCCGAGAAGTTTATGCCTGAGCGGTTCGAAGACCAAGAA 1313
Query 1261 GCTGCAAAGAAGTTGATGGTGTTTGGTAACGGACGAAGGACGTGTCCTGGTGCGACTTTA 1320
||| ||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1314 GCTTCAAAGAAACTAATGGTGTTTGGTAACGGACGAAGAACGTGTCCTGGTGCGACTTTA 1373
Query 1321 GGACAGAGGATGGTGTTGTTGGCTTTAGGTTCGTTGATTCAATGTTTTGACTGGGAAAAA 1380
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1374 GGCCAGAGGATGGTATTGTTGGCTTTAGGTTCGTTGATTCAATGCTTTGACTGGGAAAAA 1433
Query 1381 GTCAACGGTGAAGATATTGACATGACCGAGAATCCTGGAATGGCTATGCGTAAGCTCGTC 1440
||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1434 GTCAACGGTGAAGATGTTGACATGACAGAGAATCCTGGAATGGCTATGCGTAAACTCGTG 1493
Query 1441 CAATTACGAGCCGTTTGCCATAAACGTCCCATTATGACTAATCTCTTGGCTTAA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CAATTACGAGCCGTTTGCCATAAACGTCCCATTATGACTAATCTCTTGGCTTAA 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5