BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332040
Length=516
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57420.1 | Symbols: IAA33 | indole-3-acetic acid inducible 3... 787 0.0
> AT5G57420.1 | Symbols: IAA33 | indole-3-acetic acid inducible
33 | chr5:23270024-23270990 FORWARD LENGTH=547
Length=547
Score = 787 bits (426), Expect = 0.0
Identities = 486/516 (94%), Gaps = 0/516 (0%)
Strand=Plus/Plus
Query 1 ATGAACAGTTTCGAGCCACAAACCCAAGACTCATTGCAAAGAAGGTTTCATCAAGACAAC 60
||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAATAGTTTCGAGCCACAAAGCCAAGACTCTTTGCAAAGAAGGTTTCATCAAGACAAC 60
Query 61 ACCACCACGCATCAACCTCGTGACACCACGACACCTTTCATATCCAAACCGGCTTCGAAA 120
| |||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 61 AGCACCACACAACAACCTCGTGACACCACGACACCTTTCATACCCAAACCGGCTTCCAAA 120
Query 121 AACCATAACAATAGCAACTCCAGCTCCGAAGCGGCCGGTAGATCATTCCAAGGGTTTGGC 180
|||||||| ||||||||||||||||| | ||||||||| |||||||||||||| |||||
Sbjct 121 AACCATAATAATAGCAACTCCAGCTCTGGAGCGGCCGGGAGATCATTCCAAGGCTTTGGG 180
Query 181 CTTAACGTGGAGGACGATCTAGTTTCATCGGTGGTTCCTCCGGTTACGGTTGTGCTCGAG 240
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CTTAACGTAGAGGACGATCTTGTTTCATCGGTGGTTCCTCCGGTTACGGTTGTGCTAGAG 240
Query 241 GGACGTTCGATTTGCCAACGCATAAGCCTAGACAAGCATGGGAGTTATCAGAGCTTGGCT 300
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGACGTTCTATATGTCAACGCATAAGCCTAGACAAGCATGGGAGTTATCAGAGCTTGGCT 300
Query 301 TTGGCTCTAAGACAAATGTTTGTCGATGGGGCTGATTCGACAGACGATCTTGATCTGTCA 360
| ||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 301 TCGGCTCTAAGGCAAATGTTTGTCGATGGAGCTGATTCAACGGACGATCTTGATCTGTCA 360
Query 361 AACGCCATTCCTGGCCATCTTATTGCTTATGAAGACATGGAGAACGATCTCCTTCTTGCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACGCCATTCCTGGCCATCTTATTGCTTATGAAGACATGGAGAACGATCTCCTTCTTGCC 420
Query 421 GGCGATCTTACATGGAAGGACTTTGTTCGTGTAGCAAAGAGAATTCGAATCTTGCCGGTC 480
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GGAGATCTTACTTGGAAGGACTTTGTTCGTGTAGCGAAGAGAATTCGAATCTTGCCGGTC 480
Query 481 AAGGGAAACACAAGAAAAGTGAAAAGAAACGAGTGA 516
||||||||||||||| |||| |||||||||||||||
Sbjct 481 AAGGGAAACACAAGACAAGTTAAAAGAAACGAGTGA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24664966177
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5