BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332060
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57690.1 | Symbols: ATDGK4, DGK4 | diacylglycerol kinase 4 |... 2141 0.0
> AT5G57690.1 | Symbols: ATDGK4, DGK4 | diacylglycerol kinase 4
| chr5:23372063-23374469 REVERSE LENGTH=1464
Length=1464
Score = 2141 bits (1159), Expect = 0.0
Identities = 1257/1305 (96%), Gaps = 3/1305 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCACCATCGATTGGTGATTCAGTGACGGCGAGGATGATTCCACGACATTCTTCT 60
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAATCACCGTCGATTGGTGATTCATTGACGGCGAGGATGATTCCACGACATTCATCT 60
Query 61 CTCGATTCGTTCGGAGCAATGAAAGTCTCCTTATTGGTCAATCTCGCAAGCATAAGAGTC 120
||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 61 CTCGACTCATTCGGAGCAATGAAAGTCTCTTTATTGGTCAATCTCGCGAGCATAAGAGTC 120
Query 121 TCTAAAGCAGAGCTTCGTCAAAGAGTTATGCTTCCTAAATACCTCCGCATCGCAATCCGC 180
|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||
Sbjct 121 TCTAAAGCAGAGCTTCGTCAAAGAGTTATGCTTCCTCAATATCTCCGCATTGCAATACGC 180
Query 181 GATTGCATTCTCCGTAAAGACGATTCCTTCGCCGCTTCCTCCTCTGTAGCACCGCCGTTA 240
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 181 GATTGCATTCTTCGTAAAGACGATTCCTTCGACGCTTCCTCCTCTGTAGCACCACCGTTA 240
Query 241 G---ACAACGCTTTGACGCCTGAGGTTCCTCTGATGGTCTTCGTTAATCCCAAAAGCGGT 297
| ||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 241 GAAAACAACGCGTTGACGCCTGAAGTTCCTTTGATGGTCTTCGTTAATCCCAAAAGCGGT 300
Query 298 GGTCGTCAAGGTCCTCTCATCAAGGAACGTCTCCAGAATCTTATTAGCGAAGAACAGGTG 357
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTCGTCAAGGTCCACTCATTAAAGAACGTCTCCAGAATCTTATTAGCGAAGAACAGGTG 360
Query 358 TTTGATCTAACGGAAGTGAAGCCTAACGAGTTTATTCGATATGGATTGGGATGCTTAGAG 417
| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TATGATTTAACGGAAGTGAAGCCTAATGAGTTTATTCGATATGGATTGGGATGCTTAGAG 420
Query 418 GCATTAGCGTCTCGAGGTGACGAATGTGCTAAAGAGATTCGTGAAAAGATGAGAATTGTG 477
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCATTTGCGTCTCGAGGAGACGAATGTGCTAAAGAGATTCGTGAAAAGATGAGAATTGTG 480
Query 478 GTTGCAGGTGGAGATGGAACCGTTGGTTGGGTTCTAGGATGTCTCGGTGAACTCAATTTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GTTGCAGGTGGAGATGGAACCGTTGGTTGGGTTCTAGGATGTCTCGGTGAACTTAATTTA 540
Query 538 CAAAACCGGCTACCTGTTCCTCCGGTTTCTATTATGCCACTCGGAACCGGAAACGATCTT 597
||||||||| |||| |||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 541 CAAAACCGGTTACCCGTTCCTCCGGTTTCGATAATGCCACTCGGAACGGGAAACGATCTT 600
Query 598 TCAAGAAGTTTCGGATGGGGAGGTTCATTCCCATTTGCGTGGAAATCTGCGATAAAACGA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAAGAAGTTTCGGATGGGGAGGTTCATTCCCATTTGCGTGGAAATCTGCGATAAAACGA 660
Query 658 ACACTTCATAGGGCTAGTGTTGCTCCTATAAGCCGTTTAGATAGTTGGAATATTCTGATT 717
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACACTTCATAGAGCAAGTGTTGCTCCTATAAGCCGTTTAGATAGTTGGAATATTCTGATT 720
Query 718 ACAATGCCTTCTGGTGAAATTGTGGATCCTCCTTATTCTTTAAAAGCTACACAAGAATGT 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 ACAATGCCTTCTGGTGAAATTGTGGATCCTCCTTATTCTTTAAAGGCTACACAAGAATGT 780
Query 778 TACATTGACCAGGGTTTGGAGATAGAGGGAGAGATGCCTCCATCGACGAATGGCTATGAA 837
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TACATTGACCAGAATTTGGAGATAGAGGGAGAGATCCCTCCATCGACGAATGGCTATGAA 840
Query 838 GGAGTCTTCTACAATTACTTTAGTATAGGTATGGATGCTCAAGTGGCTTACGGTTTTCAC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAGTCTTCTACAATTACTTTAGTATAGGTATGGATGCTCAAGTGGCTTACGGTTTTCAC 900
Query 898 CATTTGCGCAATGAAAAGCCTTACCTTGCAAATGGCCCTATCGCCAATAAGATTATATAC 957
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CATTTGCGCAACGAAAAGCCTTACCTTGCAAATGGCCCTATCGCCAATAAGATTATATAC 960
Query 958 TCAGGATATGGTTGCTCTCAGGGTTGGTTCCTCACACACTGCATAAACGACCCGGGTTTA 1017
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 961 TCGGGATATGGTTGCTCTCAGGGTTGGTTCCTCACTCACTGCATAAATGACCCAGGTTTA 1020
Query 1018 AGGGGTCTCAAGAACATTATGACATTGCATATAAAAAAGTTGGACTCATCCGAGTGGGAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGGGGTCTCAAGAACATTATGACATTGCATATAAAAAAGTTGGACTCATCCGAGTGGGAG 1080
Query 1078 AAAGTACCAGTTCCCAAAAGTGTAAGAGCAGTTGTTGCATTGAATCTACATAGCTATGGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAAGTACCAGTTCCCAAAAGTGTAAGAGCAGTTGTTGCATTGAATCTACATAGCTATGGA 1140
Query 1138 AGTGGAAGAAACCCTTGGGGAAATCTCAAACAAGATTATCTTGAAAAAAGAGGCTTTGTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 AGTGGAAGAAACCCTTGGGGAAATCTCAAACAAGATTATCTTGAAAAAAGAGGTTTTGTG 1200
Query 1198 GAGGCACAAGCCGATGATGGACTACTTGAGATCTTTGGGTTAAAGCAAGGATGGCATGCT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAGGCACAAGCCGATGATGGACTACTTGAGATCTTTGGGTTAAAGCAAGGATGGCATGCT 1260
Query 1258 TCCTTTGTTATGGTTGAGCTCATATCTGCCAAGCACATTGCACAG 1302
|||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1261 TCCTTTGTTATGGTTGAGCTTATATCTGCCAAACACATTGCACAG 1305
Score = 296 bits (160), Expect = 4e-79
Identities = 162/163 (99%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 1332 ACAGGCGGCAGCGATACGGCTGGAGATAAGAGGAGGAGACTGGAAAGATGCGTTTATGCA 1391
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 ACAGGCGGCAGCGATAAGGCTGGAGATAAGAGGAGGAGACTGGAAAGATGCGTTTATGCA 1361
Query 1392 AATGGATGGAGAGCCATGGAAACAGCCTATGACCAGAGACTACTCTACCTTTGTTGACAT 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 AATGGATGGAGAGCCATGGAAACAGCCTATGACCAGAGACTACTCTACCTTTGTTGACAT 1421
Query 1452 TAAGAGAGTCCCTCACCAGTCTTTGGTCGTCAAAGGAGATTGA 1494
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 TAAGAGAGTCCCTCACCAGTCTTTGGTCGTCAAAGGAGATTGA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5