BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332063
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57720.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1212 0.0
> AT5G57720.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:23389745-23391620 REVERSE LENGTH=1179
Length=1179
Score = 1212 bits (656), Expect = 0.0
Identities = 823/901 (91%), Gaps = 21/901 (2%)
Strand=Plus/Plus
Query 7 TTAGAAAATGGGTTTCCTCCATATCCAGATTTCCTCAAGATCTTTAACTCCCATGAACAT 66
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 101 TTAGAAAATGGGTTTCCTCCATATCCAGATTTCCTCAAGATCTTCAACTCCCATGAAGAT 160
Query 67 TCTCAACGTTTGGTAATCCCAAGAGGTTACAACAAGTACTATCCAAACCCTCTTCCTCAG 126
||||||| |||||||||||||||| | ||||||| ||| |||||||||||||| ||||||
Sbjct 161 TCTCAACTTTTGGTAATCCCAAGAAGCTACAACAGGTATTATCCAAACCCTCTCCCTCAG 220
Query 127 ACAGCTGTTCTCAAGAAGCCGGAAGGAAGCTTCTGGAATGTCAAATGGACAATAAGCCAA 186
||||||||||||||||| ||||||||||| || ||||||||| ||||||||| |||||||
Sbjct 221 ACAGCTGTTCTCAAGAATCCGGAAGGAAGATTTTGGAATGTCCAATGGACAAAAAGCCAA 280
Query 187 GAGGAGACTATTCGCTTCCAAGAAGGTTGGGAAAAGTTTGTCAAAGACAATGGTCTTATT 246
|||| || |||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 281 GAGGTGATTATTAGCTTGCAAGAAGGTTGGGTAAAGTTTGTCAAAGACAATGGTCTTATT 340
Query 247 GACAGAGACTTTCTCTTATTCACTTATGATGGTTGTCGGAGCTTTTGGGTACGAATCCAC 306
||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||
Sbjct 341 GACAGAGACTTTCTCTTATTCACCTATGATGGTTCCCGGAGCTTTTGGGTACGCATCCAC 400
Query 307 CGGAATGGCCTCCCCTTGGAGCCAACCGCTCCTATCAAAATACAAGAAATATCAGATGAT 366
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 401 CGGAATGGCCTCCCCTTGGAGCCAACCGCTCCTATCAAAATACAAGAGATATCGGATGAT 460
Query 367 GAAGATGATA-CAATTGGTCATGGTGATCATCATAT-G--GAAGAAGGAGATAGCC-ATG 421
|||||||| | ||| |||| ||||||||| |||||| | ||||||||||||| || |||
Sbjct 461 GAAGATGAGACCAA-TGGTGATGGTGATCCTCATATGGAAGAAGAAGGAGATA-CCGATG 518
Query 422 AGAACATGATCGTTtctctctctctcGGAAGCAGCGATGAA------GCTGATGACGATG 475
|||||||||| |||||||| ||||||||||||||||||||| | |||||| ||||
Sbjct 519 AGAACATGATAGTTTCTCTTTCTCTCGGAAGCAGCGATGAAGTTGGTGATGATGATGATG 578
Query 476 ATGATTATGATACAACGA-TT-TG-TGAAGTTAACAAAGCTAGTGAAAGTTCCAAGAAAG 532
|||||||||||||| ||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 579 ATGATTATGATACAGCGATTTGTGATGAAGTTAACAAAGCTAGTGGAAGTTCCAAGAAAG 638
Query 533 GAAGGCTTGCAAGAAAGCATCGTGCTGATTCTATTGCTGCTTCTATTGA-TCCGGAAACT 591
||||| || ||||||||||||||| ||||||| | |||||||||| | |||| ||| |
Sbjct 639 GAAGGGTTACAAGAAAGCATCGTGATGATTCT-CT--TGCTTCTATT-ACTCCGCAAATT 694
Query 592 TATCTTGATGATCCCAAAAACCCGTTCTTTATTTCAACTTCATCGTGTTCGAGGCGTGTA 651
| ||||| ||||||||| ||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 695 TTTCTTGCTGATCCCAATAACCCGTTCTTCATTTCAACTTCATCGTGTTCCAGGCGTATA 754
Query 652 TTGGTAATTGCTAGGCAAGTAATAAAAGACTATGACTTAAACTTTGACGGCACTATCAAA 711
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 755 TTGGTAATTGCTAGGCAAGTAATAAAAGACTATGGCTTAAACTTTGACGGCACGGTCAAT 814
Query 712 CTCATCGATGGATTCGGGGAATTAACGAGAAAGGTTGGGAAATGGAAAGATCGTGTTGTG 771
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTAATCGATGGATTCGGGGAATTAACGAGAAAGGTTGGGAAATGGAAAGATCGTGTTGTG 874
Query 772 GTATACAAGTGGGACGAAATGTTTACGAGAAACAAAGCAAATCAAGGAGACGCAATCATA 831
||||||||||| |||||||||||||||| ||||||| ||| |||||||||| |||||||
Sbjct 875 ATATACAAGTGGAACGAAATGTTTACGAGGAACAAAGTAAAGCAAGGAGACGTAATCATA 934
Query 832 TGTGAGGTTATACGCGAAGAAGATGTTGTTCGCTCCATCAAAGTGCACTTCGTGAAGAAT 891
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 TGTGAGATTATACGCGAAGAAGATGTTGTTCGCTCCATCAAAGTGCACTTCGTGAAGAAT 994
Query 892 T 892
|
Sbjct 995 T 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5