BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332076
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57850.1 | Symbols: | D-aminoacid aminotransferase-like PLP... 1352 0.0
> AT5G57850.1 | Symbols: | D-aminoacid aminotransferase-like PLP-dependent
enzymes superfamily protein | chr5:23435291-23437327
REVERSE LENGTH=1419
Length=1419
Score = 1352 bits (732), Expect = 0.0
Identities = 839/892 (94%), Gaps = 2/892 (0%)
Strand=Plus/Plus
Query 1 ATGTACTCAAGTGTTGTTGATGGAATAACAACTGATCCAGCAGCAATGGTTCTTCCATTG 60
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 272 ATGTACTCAAGTGTTGTTGATGGAATTACAACCGATCCAGCAGCGATGGTTCTTCCATTG 331
Query 61 GATGATCACATGGTTCACCGTGGTCATGGAGTCTTTGACACTGCCATTATCATTAATGGA 120
||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 332 GATGATCACATGGTTCACCGTGGTCATGGAGTCTTTGACACTGCCCTGATCATCAATGGA 391
Query 121 TACCTTTATGAATTGGATCAGCACCTTGACCGTATCCTACGATCTGCGTCCATGGCTAAG 180
|||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||
Sbjct 392 TACCTTTATGAATTGGATCAGCACCTTGACCGTATCTTGCGATCTGCATCAATGGCTAAG 451
Query 181 ATCCCACTTCCATTCGATCGAGAAACTATTAAAAGGATTCTCATCCAGACTGTGAGCGTT 240
||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||
Sbjct 452 ATCCCACTTCCATTCGATCGAGAAACTATTAAAAGAATTCTCATTCAAACCGTGAGCGTT 511
Query 241 TCTGGTTGTAGAGATGGCTCTCTAAGATACTGGCTCTCTGCAGGCCCAGGGGATTTCCTC 300
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 512 TCTGGATGTAGAGATGGATCTCTAAGATACTGGCTCTCTGCAGGGCCAGGGGATTTCCTC 571
Query 301 CTATCTCCATCTCAATGTCTCAAACCAACTCTCTACGCCATTGTGATAAAAACGAAGTTG 360
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 572 CTATCTCCATCTCAATGTCTCAAACCAACTCTCTATGCCATTGTTATAAAAACGAACTTC 631
Query 361 GCCATTAACCCAACAGGTGTCAAGGTAGTGACCTCGTCCATTCCCATAAAGCCTCCAGAG 420
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 632 GCCATTAACCCAATAGGTGTCAAGGTAGTGACCTCGTCCATCCCCATAAAGCCTCCAGAG 691
Query 421 TTTGCGACAGTGAAAAGCGTTAACTACCTCCCTAACGTGCTCTCTCAAATGGAGGCTGAG 480
||||| || |||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 692 TTTGCCACGGTGAAAAGTGTTAACTACCTCCCTAACGTACTCTCACAAATGGAAGCTGAG 751
Query 481 GCCAACGGAGCTTATGCAGGTATTTGGGTGAGTGAAGATGGGTTTATTGCAGAAGGTCCG 540
||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 752 GCCAAAGGAGCTTATGCAGGTATTTGGGTGTGTAAAGATGGGTTTATTGCAGAAGGCCCG 811
Query 541 AACATGAATGTGGCATTTGTTGTTAATGGTGGCAAGGAGCTTGTGATGCCGCGGTTTGAT 600
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 812 AACATGAATGTGGCGTTTGTTGTTAATGGTGGTAAGGAGCTTGTGATGCCGCGGTTTGAT 871
Query 601 AACGTTTTGAGCGGATGTACAGCAAAGAGAACGCTTACACTCGTTGAACAGCTTTTAAGC 660
|||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 872 AACGTTTTGAGCGGATGTACAGCAAAGAGAACACTTACACTCGCTGAACAGCTTGTAAGC 931
Query 661 AAGGGGATGCTTAAAAGTGTGAAAGTAATGAATATGACAGTCGAAGATGGAAAGAAAGCA 720
|||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 932 AAGGGGATTCTTAAAACTGTGAAAGTAATGGATGTGACAGTCGAAGATGGAAAGAAAGCA 991
Query 721 GATGAGATGATGCTTATTGGTAGCGGAGTTCTC-ATCAGACCTGTGATTCAATGGGATGA 779
||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||
Sbjct 992 GATGAGATGATGCTTATTGGTAGTGGAATTC-CGATCAGACCTGTGATTCAATGGGATGA 1050
Query 780 AGAACTTATTGGTGATGGAAAAGAAGGTCCTATAGCAAAGGCACTTCTTGATCTGTTACT 839
|||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1051 AGAATTTATTGGTGAAGGAAAAGAAGGTCCTATAGCAAAGGCGCTTCTTGATCTGTTACT 1110
Query 840 TGAAGATATGAGATCTGGACCACCTTCTGTTCGTGTTCTTATTCCATACTGA 891
|||||||||||||||||| |||||||| |||||||||||| |||| ||||||
Sbjct 1111 TGAAGATATGAGATCTGGTCCACCTTCCGTTCGTGTTCTTGTTCCTTACTGA 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5