BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332081

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57910.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   894    0.0  


> AT5G57910.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G30630.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:23451149-23452614 REVERSE LENGTH=885
Length=885

 Score =  894 bits (484),  Expect = 0.0
 Identities = 583/630 (93%), Gaps = 9/630 (1%)
 Strand=Plus/Plus

Query  1    ATGAATCCAAGTCACAAAGATTTCATTTCCTTGAGCCCTAATCCTTTTGAGGATCCGAAG  60
            |||||||||| ||||  |||||||| | |||||| | |||||| ||| |||||||| |||
Sbjct  152  ATGAATCCAACTCACGGAGATTTCACTCCCTTGAACTCTAATCATTTCGAGGATCCAAAG  211

Query  61   GTCAGGCTTAGGCATCTTAGCCTTATGCAAGACTATGGAGAATTGCATATGGAAACCGAA  120
            |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  GTCAGGTTTAGGCATCATAGCCTTATGCAAGACTATGGAGAATTGCATATGGAAACCGAA  271

Query  121  GTTATGAGAAAAAGGTTACAGGCAGTGCGAGAAAGAAAGGCAACACTAATGGCTGAAGTC  180
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  GCTATGAGAAAAAGGTTACAGGCAGTGCGAGAAAGAAAGGCAACACTAATGGCTGAAGTC  331

Query  181  AGATTTCTGCGTCGGAGATACAGACATTTGAGAGAAGACCAGCCACAAGACATTAAAAAG  240
            ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct  332  AGATTTCTGCGACGGAGATACAGACATTTGAGACAAGACCAGCCACAAGAGATTAAAAAG  391

Query  241  GTTAGAGGAAGATCAAATGGTGGGAGGAAGATCCGAGTGGAAGTGTCTCCTAATAAGAGA  300
            || |||  | ||||||||||||||| |||||||||||||||||||||||||| ||| | |
Sbjct  392  GTCAGA--A-GATCAAATGGTGGGAAGAAGATCCGAGTGGAAGTGTCTCCTAGTAACAAA  448

Query  301  AGTGAGACGGAAACTAAGCATGTTTCGCTTCCTGACTTAAACCATTCGGGAAAGGCTCAC  360
            |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct  449  AGTGAGGCGGAAACTAAGCATGTTTCGCTTCCTGACTTAAACCACTCGGAAAAGGCTCAC  508

Query  361  GATGAAACCAAAACCAGTCCTAAGAGAAGAGTTCCATTGTTCGATCTAAACCAGATATCT  420
            ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct  509  GATGAAACCAAAACCAGTCCTAAGAGAAGAGTTCCTTTGTTTGATCTAAATCAGATATCT  568

Query  421  GGAGAAGAAGAGCAAGAAACAGAGGCAGTGGATAATAATAATCAAGAGAAGACGAGAGTT  480
            |||||||||||||||||||||||||||||||| ||||||   |||||||| |||||||||
Sbjct  569  GGAGAAGAAGAGCAAGAAACAGAGGCAGTGGACAATAAT---CAAGAGAACACGAGAGTT  625

Query  481  GAAGAAAGTAGTTCATGTAAGAGA--A-TGAGCAGCGGCATTGAGATGCAGCAGAAAGAT  537
            |||||||||| |||||||||||||  | ||| |||  |||||||||||||||||||||||
Sbjct  626  GAAGAAAGTAATTCATGTAAGAGATTAATGATCAGTAGCATTGAGATGCAGCAGAAAGAT  685

Query  538  GTGAAGCTATCTTCTTGCAGGAATGGCGGAAACGGGTCAAACAAGAGGAAAATTTCATGG  597
            ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  686  GTGAAGCCATCTTCTTGCAGGAATGGCGGAAACGGATCAAATAAGAGGAAAATTTCATGG  745

Query  598  CAAGATCCTGTTGCAGCTCTCAGAGTGTAA  627
            ||||||||||| |||||||||||||| |||
Sbjct  746  CAAGATCCTGTCGCAGCTCTCAGAGTCTAA  775



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5