BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332082
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57920.1 | Symbols: ENODL10, AtENODL10 | early nodulin-like ... 800 0.0
> AT5G57920.1 | Symbols: ENODL10, AtENODL10 | early nodulin-like
protein 10 | chr5:23453599-23454397 FORWARD LENGTH=725
Length=725
Score = 800 bits (433), Expect = 0.0
Identities = 515/553 (93%), Gaps = 11/553 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTCACTAATGA--TG-TGTTGTTTGCTTCTCTTGTTTGGTTTGTTGTCTGAAGGT 57
||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 36 ATGTCTTCAGTAATGATGTGTTGTTGTTTGCTTCTCTTGTTTGGTTTGTTGTCTGAAGGT 95
Query 58 AGAGAGATTCTGGTGGGAGGCAAGTCTAACACATGGAAAGTTCCGGAATCTAGAGATGAA 117
||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||
Sbjct 96 AGAGAGATTCTGGTGGGAGGCAAATCTAACACATGGAAGGCTCCAGAATCTAGAGATGAA 155
Query 118 ACACTAAACCAATGGTCAGAG-AGAACAAGATTCAAGATTGGAGATTCTCTCTTGTGGAA 176
||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 156 ACACTAAACCAATGGTCAG-GCAGAACAAGATTCAAAATTGGAGATTCTCTCTTGTGGAA 214
Query 177 ATACAATGCAGAGAATGATTCAGTGCTACAAGTAAGGGAAAAAGATTACGAGAGATGTGA 236
||||||||| ||||||||||||||| | ||||| || ||| ||||||||||||||||||
Sbjct 215 ATACAATGCGGAGAATGATTCAGTGTTGCAAGTGAGACAAACAGATTACGAGAGATGTGA 274
Query 237 CAGATCAGAGCCTATAAGAGGATACAAAGATGGTCACACGAATATAGAGCTGAAGAGGTC 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CAGATCAGAGCCAATAAGAGGATACAAAGATGGTCACACGAATATAGAGCTGAAGAGGTC 334
Query 297 AGGTCCATTTTACTTCATAAGTGGAGAAGAAGGACATTGCCAAAGAGGTGAGAAGCTTCG 356
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 335 AGGTCCTTTTTACTTCATAAGTGGAGAAGAAGGACATTGCCAAAGAGGAGAGAAGCTTCG 394
Query 357 TGTCGTTGTCTTGTCTCCAAATCATAAGAGAAGCGTTGTTGATGCTCCTGCTCCTGTAAA 416
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 395 TGTTGTTGTCTTGTCTCCAAATCACAACAGAAGCGTTGTTGATGCTCCTGCTCCTGTAAA 454
Query 417 CGTCGACTTGTCTCCAAATTACAACAGAAGCGTTGCTGCTCCTCCTGTAAACGCTCATAT 476
| | | |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 455 CATTGTCTTGTCTCCAAATTACAACAGAAGCGTTGCTGCTGCTCCTTTAAACGCTCATAT 514
Query 477 CACAAACAAGGGAAGCCTGAACAGAGGAGCATGGAGTTTGCTTCTTCTTC--C-ATTAGG 533
|| ||||||||||||||||||| || ||||||||||||||||||||| | ||||||
Sbjct 515 CATGAACAAGGGAAGCCTGAACACAG---CATGGAGTTTGCTTCTTCTTCTTCCATTAGG 571
Query 534 CCTTTTGGTTTAG 546
|||||||||||||
Sbjct 572 CCTTTTGGTTTAG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5