BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332090
Length=3021
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58003.1 | Symbols: CPL4 | C-terminal domain phosphatase-lik... 1332 0.0
AT5G58000.1 | Symbols: | Reticulon family protein | chr5:23477... 640 0.0
AT2G12050.1 | Symbols: | pseudogene, embryogenesis protein-rel... 219 2e-55
AT3G32377.1 | Symbols: | pseudogene, similar to aintegumenta-l... 213 8e-54
AT3G31908.1 | Symbols: | pseudogene, similar to aintegumenta-l... 206 1e-51
> AT5G58003.1 | Symbols: CPL4 | C-terminal domain phosphatase-like
4 | chr5:23479804-23482048 FORWARD LENGTH=1555
Length=1555
Score = 1332 bits (721), Expect = 0.0
Identities = 972/1083 (90%), Gaps = 57/1083 (5%)
Strand=Plus/Plus
Query 1576 ACTT-TTCCACTTTCACGGTTGCACACCGTCGCGGCATCTCCACTC-TTTCCTCTCAAAA 1633
|||| || |||||| |||||||| |||||||| | ||||||||||| |||||| ||||||
Sbjct 1 ACTTCTT-CACTTTTACGGTTGCTCACCGTCGTGACATCTCCACTCTTTTCCTTTCAAAA 59
Query 1634 CT-CAAAATCACGATTTTGAGGTTCTCTCGCCTCAGGCGAACAAGTTTAAGATGAGCGTA 1692
| ||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 60 -TCCAAAATCACGA-TTTGATTTTCTCTCGCCTCCGACGAACAAGTTTAAGATGAGCGTA 117
Query 1693 GCAAGTGATTCTCCAGTTCATTCATCAAGTAGTAGTGACGATCTTGCTGCATTCCTTGAT 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 GCAAGTGATTCTCCAGTTCATTCATCAAGTAGTAGTGACGATCTTGCTGCATTCCTTGAT 177
Query 1753 GCTGAACTGGACTCTGCCTCAGATGCTTCTTCTGGACCCAGCGAAGAAGAAGAAGAAGCC 1812
|||||| | |||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 178 GCTGAATTAGACTCTGCATCAGATGCTTCGTCTGGACCCAGC---GAAGAAGAAGAAGCT 234
Query 1813 GAGGATGATGAAGAATCTGGGTTAAAGAGACGAAAGTTAGAGCATTTAGAAACTGTAGAC 1872
|||||||||| |||||||||||||||||||| || | || || | | || |
Sbjct 235 GAGGATGATGTAGAATCTGGGTTAAAGAGAC--AA---A-AG---TT-G-----G-AG-C 277
Query 1873 GAAGAGGAGATT-GAGGAAGCATCCTCAAGTAAAGGTGAATGCCAGCACCCAGGATCATT 1931
| || ||||||||||||||||| ||||| |||||| |||| |||||||||||
Sbjct 278 -------A-TTTAGAGGAAGCATCCTCAAGCAAAGGCGAATGCGAGCATCCAGGATCATT 329
Query 1932 TGGGAATATGTG-TTTCGTCTGTGGACAAAAGTTGGAAGAAACCGGTGTTTCATTTAGAT 1990
|||||||||||| ||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct 330 TGGGAATATGTGCTTT-GTATGTGGACAAAAACTGGAAGAAACTGGTGTTTCATTTAGAT 388
Query 1991 ACATACACAAGGAAATGAGGCTCAATGAAGATGAAATCTCCCGGTTGCGTGATTCAGATT 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 ACATACACAAGGAAATGAGGCTCAATGAAGATGAAATCTCCCGGTTGCGTGATTCAGATT 448
Query 2051 CGAGATTCTTGCAACGCCAGCGGAAGTTGTATTTAGTTCTCGATCTAGACCACACGCTGC 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 449 CGAGATTCTTGCAACGCCAGCGGAAGTTGTATTTAGTTCTCGATCTAGACCACACACTGC 508
Query 2111 TTAATTCAACCGTACTAAGGGACCTGAAACCAGAGGAGGAATACTTGAAAAGCCATACAC 2170
| ||| ||||| |||| |||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 509 TAAATACAACCATACTGAGGGACCTAAAACCAGAGGAGGAATACTTGAAAAGTCATACTC 568
Query 2171 ATTCTCTTCAAGAACCTTTTGATTTTTTGTTAATCTCAGATGTTTCCGGAGGCAGTCTTT 2230
|||||||||||| | || | | | || |||||||||||||||||||||
Sbjct 569 ATTCTCTTCAAG-A-----TG-------G-T--T-GCA-ATGTTTCCGGAGGCAGTCTTT 610
Query 2231 TCATGCTGGAATTTATGCACATGATGACCAAACTGAGGCCATTTGTTCACTCATTTCTAA 2290
|| | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 611 TCCTACTGGAATTTATGCAAATGATGACCAAACTGAGGCCGTTTGTTCACTCATTTCTAA 670
Query 2291 AAGAAGCCAGTGAGATGTTTGTGATGTACATATACACAATGGGAGATAGGGCA-TATGCG 2349
||||||| |||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 671 AAGAAGCTAGTGAGATGTTTGTGATGTACATATACACAATGGGAGATA-GGAATTATGCA 729
Query 2350 CGACAGATGGCGAAGCTACTGGACCCCAAAGGAGAGTACTTTGGTGATCGGATCATTTCT 2409
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 730 CGACAGATGGCCAAGCTGCTGGACCCCAAAGGAGAGTACTTTGGTGATCGGGTCATTTCT 789
Query 2410 CGGGATGACGGCACAGTGAGACATCAAAAGAGTCTAGATGTGGTGCTCGGACAAGAAAGT 2469
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 790 CGGGATGACGGCACAGTGAGACATGAAAAGAGTCTAGATGTGGTGCTTGGACAAGAAAGT 849
Query 2470 GCTGTTCTGATTCTTGACGATACAGAGAATGCGTGGCCAAATCACAAGGACAATTTGATT 2529
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 850 GCTGTTCTGATTCTTGACGATACAGAGAATGCGTGGCCAAAGCACAAGGACAATTTGATT 909
Query 2530 GTGATAGAGAGGTATCACTTTTTCGCTTCGAGCTGCAGACAGTTTGATCACAAATACAAG 2589
||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 910 GTGATAGAGAGATATCACTTTTTTTCTTCGAGCTGCAGGCAGTTTGATCACAGATACAAG 969
Query 2590 TCTCTATCGGAGTTGAAGAGCGATGAGAGTGAACCAGATGGGGCACTTGCAACAGTTCTG 2649
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 970 TCTCTATCGGAGTTGAAGAGTGATGAGAGTGAACCAGATGGGGCACTTGCAACTGTCCTG 1029
Query 2650 AAA 2652
|||
Sbjct 1030 AAA 1032
Score = 534 bits (289), Expect = 2e-150
Identities = 343/369 (93%), Gaps = 3/369 (1%)
Strand=Plus/Plus
Query 2653 AATGTGGATAAAGACATATCAAACAGAGATGTTAGGTCAATGCTGAAACAAGTGCGTAAA 2712
||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1066 AATGTGGATGAAGGCATATCAAACAGAGATGTTAGGTTAATGCTGAAACAAGTGCGTAAA 1125
Query 2713 GAGGTACTCAAAGGATGTAAAGTAGTGTTCAGTCGGGTGTTCCCAACCAAGGCTAAGCCA 2772
||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1126 GAGATACTTAAAGGATGTAAAATAGTGTTCAGTCGGGTGTTCCCAACCAAGGCAAAGCCA 1185
Query 2773 GAAGATCACCCTCTGTGGAAAATGGCCGAGGAACTGGGAGCCACCTGTGCAACGGAAGTG 2832
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1186 GAAGATCACCCCCTGTGGAAAATGGCTGAGGAACTGGGAGCCACCTGCGCAACGGAAGTG 1245
Query 2833 GATGCATCAGTGACACACGTGGTGGCTATGGATGTGGGAACAGAGAAGGCACGTTGGGCA 2892
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1246 GATGCATCAGTGACACACGTTGTGGCAATGGATGTGGGAACAGAGAAGGCTCGTTGGGCC 1305
Query 2893 GTAAGAGAGAAGAAGTATGTGGTTCATAGAGGATGGATAGATGCAGCTAATTACCTGTGG 2952
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1306 GTTAGAGAGAAGAAGTATGTGGTTCATAGAGGATGGATAGATGCAGCTAATTACCTTTGG 1365
Query 2953 AAGAAGCAGCCAGAAGAGAAGTTCAGTTTAGAGCAGCTCAAGAAGCAACAAGTAGCGGAA 3012
| ||| |||||||||||||| ||| ||||||||||||||||||||||| | | || ||
Sbjct 1366 ATGAAACAGCCAGAAGAGAACTTCGGTTTAGAGCAGCTCAAGAAGCAATT-G-ACCG-AA 1422
Query 3013 GAAGAGTGA 3021
|||||||||
Sbjct 1423 GAAGAGTGA 1431
> AT5G58000.1 | Symbols: | Reticulon family protein | chr5:23477411-23479598
FORWARD LENGTH=1571
Length=1571
Score = 640 bits (346), Expect = 0.0
Identities = 374/388 (96%), Gaps = 0/388 (0%)
Strand=Plus/Plus
Query 848 TGATGTGGAGAGATGTATCAAGGTCGACGCTTGTGTTCGGCTTTGGGACATTCCTCATAA 907
|||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct 706 TGATGTGGAGGGATGTATCAAGGTCGACGCTTGTGTTTGGCTTCGGAACATTCCTCATCA 765
Query 908 TCTCTTCCTCCTACGCCAATGATCTCAATTTCAGCTTCATATCGGTGGTGGCGTACATGG 967
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 766 TCTCTTCTTCCTACGCCAATGATCTCAATTTCAGCTTCATATCGGTGGTAGCGTACATGG 825
Query 968 GACTCATCTATCTCGGCCTCATGTTCGTATTAAAATCACTGATCCACAGGGGAATGGTGG 1027
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GACTCATCTATCTCGGTCTCATGTTCGTATTAAAATCACTGATCCACAGGGGAATGGTGG 885
Query 1028 AGGAGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTCAAGAGGATGCTCAGAC 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AGGAGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTCAAGAGGATGCTCAGAC 945
Query 1088 TCATAATGCCTTACCTCAATGAGTCTCTGCATCAACTCAGAGCTCTCTTCTCCGGCGATC 1147
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 946 TCATAATGCCTTATCTCAACGAGTCTCTGCATCAACTCAGAGCTCTCTTCTCCGGTGATC 1005
Query 1148 CATCCACCACCCTCAAGATGGGAGTGGTGTTGTTTGTCTTGGCCAGGTGTGGCTCTTCTA 1207
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1006 CATCAACCACTCTCAAGATGGGAGTAGTGTTGTTTGTCTTGGCCAGGTGTGGCTCTTCTA 1065
Query 1208 TCACTCTTTGGAACCTCGCCAAATTTGG 1235
||||||||||||||||||||||||||||
Sbjct 1066 TCACTCTTTGGAACCTCGCCAAATTTGG 1093
Score = 549 bits (297), Expect = 5e-155
Identities = 494/580 (85%), Gaps = 50/580 (9%)
Strand=Plus/Plus
Query 299 CTCCGATGACGCCGAGGAGATCGTTGTCTAGTACTGACACCAATGATAAGAGTCCGAGTT 358
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 1 CTCCGATGACGCCGAGGAGATCGTTGTCTAGTAGTGATTCTAATGATAAGAGTCCGAGTG 60
Query 359 TGTCGGTGGCGGCGAAGAAGGCGAGATCTGAATCTGTAGAGGGGAATGAGAAGA---CTA 415
||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 61 TGTCGGTGGTGGCGAAGAAGGCAAGATCTGAATCTGTAGAGGGGATTGAGAAGAAGACTA 120
Query 416 CTCCGGGTCGGGTTAAGAAGA-CACGATCGGAAATATGCACGACGATCGTTAAAGCGGGT 474
|||||||||| |||||||||| | |||||||| | |||||||||||||||||||| |||
Sbjct 121 CTCCGGGTCGAGTTAAGAAGATC-CGATCGGAGGTCTGCACGACGATCGTTAAAGCCGGT 179
Query 475 GAATTTGATTCAGTTGCGTTGAGGAAAGTGAGTTCATTGCCAGCTCCTAATTCTGAGAAA 534
||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||
Sbjct 180 GAATTTGATTCAGTTGCGTTGAGGAAAGTGAATTCGTTGCCATCTCCAAATTCTGAGAAA 239
Query 535 TCTGATAAGAAAACAGAGCATGTAGTAAATGTACCGGAAGAGGAGACTATCAATGAGAAT 594
||||||| |||||||||||| || || || | | |||||| |||||||
Sbjct 240 TCTGATACGAAAACAGAGCA---AG-AA--GT---G-A--------CTATCATTGAGAAT 281
Query 595 TCGAAGATCCCAGAGGAAGTCAAGGAGTTTGGTGTTTGTCAGGAGATGATCGTATCTGCT 654
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCGAAGATCCCAGAAGAAGTCAAGGAGTTTGGTGTTTGTCAGGAGATGATCGTATCTGCT 341
Query 655 AATTCGAACGAAGATGAGCGGATCAATGATGGCGATCACGAG---g---a--a-gatgat 705
|| || |||||| |||||| ||| | ||||||| || ||| | | | ||||||
Sbjct 342 AAATCAAACGAAAATGAGCAGATTGACAATGGCGACCAGGAGATTGGTGATCAAGATGAT 401
Query 706 ---gaagaaga-g-a-a--ag-a--ag-aa-ga-a-gtggagaagaagagtgttgatgtg 750
|||||||| | | | || | || || || | ||||||||||||||||||||||||
Sbjct 402 TATGAAGAAGATGGAGATGAGGAGGAGGAAAGAGAAGTGGAGAAGAAGAGTGTTGATGTG 461
Query 751 aaagagatgaatgtagccaaggagaagagagTTGGTG-T-T-GAGATTAAAAAGTTGAGT 807
|| ||||| |||||||||||||| || |||||||||| | | |||||||||||||| |||
Sbjct 462 AAGGAGATAAATGTAGCCAAGGAAAACAGAGTTGGTGGTGTTGAGATTAAAAAGTTTAGT 521
Query 808 CAATTCCAAAACAGAACATCTCCATCTCCGTCGTCCGTTC 847
||||| ||||||||||||||||||||||||||||||||||
Sbjct 522 CAATTTCAAAACAGAACATCTCCATCTCCGTCGTCCGTTC 561
Score = 344 bits (186), Expect = 3e-93
Identities = 222/240 (93%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 1234 GGAAATTTCTGGATGAGGAGATTCAGGGACGCATGGGAATCTTGCAATCACAAAAAGGCG 1293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GGAAATTTCTGGATGAGGAGATTCAGGGACGCATGGGAATCTTGCAATCACAAAAAGGCA 1217
Query 1294 GTGGCTTTGGCGCTCTTCACCCTCGTCTGGAACCTCTCTTCCGTCACTGCCCGTGTTTGG 1353
||||||||||| || |||||| | || ||||||||||| || ||||||||||||||||||
Sbjct 1218 GTGGCTTTGGCACTTTTCACCTTAGTTTGGAACCTCTCCTCAGTCACTGCCCGTGTTTGG 1277
Query 1354 GCAGCATTCATGTTACTAGTTGCCTTCAGATATTATCAACATAAGATGATTTGGACGACT 1413
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 1278 GCAGCATTCATGTTACTCGTCGCCTTCAGATATTATCAACATAAGATGATTTGGACAACT 1337
Query 1414 GATCAAGCtgatgatgatgatgatgaAAATGTAGTAGACgaagaagaagaagaagaagaa 1473
|||||||||||||||||||| ||||| |||| || ||| |||| |||||||||| |||||
Sbjct 1338 GATCAAGCTGATGATGATGAGGATGACAATGAAGAAGAAGAAGCAGAAGAAGAAAAAGAA 1397
> AT2G12050.1 | Symbols: | pseudogene, embryogenesis protein-related,
similar to BABY BOOM (Arabidopsis thaliana) GI:21069057;
contains a non-consensus AT-acceptor splice site. This
is very likely a pseudogene.; blastp match of 64% identity
and 4.6e-09 P-value to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like
protein {Oryza sativa} | chr2:4857014-4858186
REVERSE LENGTH=1173
Length=1173
Score = 219 bits (118), Expect = 2e-55
Identities = 138/147 (94%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 1021 ATGGTGGAGGAGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTCAAGAGGATG 1080
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTGAAGAAGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTAAAGAGGATG 60
Query 1081 CTCAGACTCATAATGCCTTACCTCAATGAGTCTCTGCATCAAC---TCAGAGCTCTCTTC 1137
||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 61 CTCAGACTCATCATGCCTTACCTCAATGAGTCACTGCATCAACAACTCAGAGCTCTCTTC 120
Query 1138 TCCGGCGATCCATCCACCACCCTCAAG 1164
|| ||||||||||||||||||||||||
Sbjct 121 TCTGGCGATCCATCCACCACCCTCAAG 147
> AT3G32377.1 | Symbols: | pseudogene, similar to aintegumenta-like
protein, blastp match of 59% identity and 1.0e-09 P-value
to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like
protein {Oryza sativa} | chr3:13311477-13313243 REVERSE LENGTH=1767
Length=1767
Score = 213 bits (115), Expect = 8e-54
Identities = 141/153 (92%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 1015 AGGGGAATGGTGGAGGAGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTCAAG 1074
|||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 363 AGGGGAATGGCGAAGAAGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTAAAG 422
Query 1075 AGGATGCTCAGACTCATAATGCCTTACCTCAATGAGTCTCTGCATCAAC---TCAGAGCT 1131
|||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 423 AGGATGCTCAAACTCATCATGCCTTACCTCAATGAGTCACTGCATCAACAACTCAGAGCT 482
Query 1132 CTCTTCTCCGGCGATCCATCCACCACCCTCAAG 1164
|||||||| ||| ||||||||||||||||||||
Sbjct 483 CTCTTCTCTGGCTATCCATCCACCACCCTCAAG 515
> AT3G31908.1 | Symbols: | pseudogene, similar to aintegumenta-like
protein, blastp match of 58% identity and 3.6e-07 P-value
to GP|21304225|gb|AAL47210.1||AY062179 aintegumenta-like
protein {Oryza sativa} | chr3:12902409-12903522 REVERSE LENGTH=1114
Length=1114
Score = 206 bits (111), Expect = 1e-51
Identities = 129/137 (94%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 1031 AGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTCAAGAGGATGCTCAGACTCA 1090
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3 AGGAGAGACATAAAGTGGTTGGAGTTAGAGAGGAAGATGTAAAGAGGATGCTCAGACTCA 62
Query 1091 TAATGCCTTACCTCAATGAGTCTCTGCAT---CAACTCAGAGCTCTCTTCTCCGGCGATC 1147
| |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 63 TCATGCCTTACCTCAATGAGTCACTGCATGAACAACTCAGAGCTCTCTTCTATGGCGATC 122
Query 1148 CATCCACCACCCTCAAG 1164
|||||||||||||||||
Sbjct 123 CATCCACCACCCTCAAG 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150199827342
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5