BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332092
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483545-234... 1458 0.0
> AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483545-23484889
REVERSE LENGTH=1019
Length=1019
Score = 1458 bits (789), Expect = 0.0
Identities = 859/894 (96%), Gaps = 0/894 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAATGGGAATGGAGAAGGAAAGGGAGAGTTCATAAACCAAAACAATGACTTCTTC 60
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAAATGGAAATGGAGAAGGAAAAGGAGAATTCATAAACCAAAACAATGACTTCTTC 60
Query 61 CTTGATTCCATGTCAATGctctcctctctccctccttgttgggatccatctcttcctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGATTCCATGTCAATGCTCTCCTCTCTCCCTCCTTGTTGGGATCCATCTCTTCCTCCT 120
Query 121 cctcctcctccACCGCAATCTCTTTTCCATGCTCTCGCCGTCGATGCTCCCTTCCCCGAC 180
||||||||||| || |||||||||||||| ||||| |||||||| || ||||||||||||
Sbjct 121 CCTCCTCCTCCGCCACAATCTCTTTTCCACGCTCTAGCCGTCGACGCCCCCTTCCCCGAC 180
Query 181 CAGTTCCATCACCCTCAGGAGTCAGGTGGTCCAACAATGGGAAGCCAAGAAGGGTTACAG 240
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 CAGTTCCATCATCCTCAGGAGTCAGGAGGTCCAACAATGGGTAGCCAAGAAGGGTTACAG 240
Query 241 GCACAAGGGACAGTGTCGACCACGAGCGCACCTGTTGTTCGTCAAAAGCCAAGGGTTCGA 300
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CCACAAGGTACAGTGTCGACCACGAGCGCACCTGTTGTTCGTCAAAAGCCAAGAGTTCGA 300
Query 301 GCCAGGAGAGGCCAAGCCACCGATCCTCACAGTATCGCTGAGAGGCTAAGGAGGGAACGT 360
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 301 GCCAGGAGAGGCCAAGCCACCGATCCTCACAGTATCGCTGAGAGGCTTAGAAGGGAACGC 360
Query 361 ATCGCAGAGCGTATGAAGTCTCTCCAAGAACTGGTTCCCAACACCAACAAGACGGATAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGCAGAGCGTATGAAGTCTCTCCAAGAACTGGTTCCCAACACCAACAAGACGGATAAG 420
Query 421 GCATCAATGTTGGACGAGATCATCGAATATGTTAGGTTCCTTCAGCTTCAAGTCAAAGTA 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GCATCAATGTTGGACGAGATCATCGAGTATGTTAGGTTCCTTCAGCTTCAAGTCAAAGTA 480
Query 481 CTAAGCATGAGCAGATTGGGAGGTGCAGGAGCAGTTGGTCCACGCCTAAATGGTCTCTCC 540
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 481 CTAAGCATGAGCAGATTGGGAGGTGCAGGATCAGTTGGTCCACGCCTCAATGGTCTCTCC 540
Query 541 GCAGAGGCTGGAGGACGGCTCAATGCCCTCACTGCACCGTGCAATGGCTTAAATGGGAAT 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAGAGGCAGGAGGACGGCTCAATGCCCTCACTGCACCGTGCAATGGCTTAAATGGGAAT 600
Query 601 GGAAACGTTACAGGATCATCCAATGAGAGCCTAAGGTCAACAGAACAAAGAGTGGCAAAA 660
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 GGAAACGCTACAGGATCGTCCAATGAGAGCCTAAGGTCAACAGAACAAAGAGTGGCGAAA 660
Query 661 CTGATGGAAGAAGATATGGGATCAGCAATGCAGTATCTTCAAGGGAAGGGGCTTTGCTTA 720
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 661 CTGATGGAGGAAGACATGGGATCAGCAATGCAATACCTTCAAGGGAAGGGGCTTTGCTTA 720
Query 721 ATGCCAATCTCTCTCGCAACCGCGATATCATCATCAACTACTCACTCTCGTGGATCTCTC 780
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 ATGCCAATATCTCTCGCAACCGCGATATCATCATCAACTACTCACTCTCGTGGATCCCTC 780
Query 781 TTTAACCCCATCTCCAATGCCGTAGCAGCAGAGGATTCAAATGTAACAGCAACTGCAGTT 840
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTAACCCCATCTCCAGTGCTGTAGCAGCAGAGGATTCAAATGTAACAGCAACTGCAGTT 840
Query 841 GCTGCACCTGAAGCCTCCTCTACTATGGATGATGTATCTGCCTCCAAGGCCTGA 894
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 841 GCTGCACCTGAAGCCTCGTCTACTATGGATGATGTATCTGCTTCCAAGGCCTGA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43653473743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5