BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332107
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58190.2 | Symbols: ECT10 | evolutionarily conserved C-termi... 1910 0.0
> AT5G58190.2 | Symbols: ECT10 | evolutionarily conserved C-terminal
region 10 | chr5:23546373-23549549 FORWARD LENGTH=1834
Length=1834
Score = 1910 bits (1034), Expect = 0.0
Identities = 1194/1271 (94%), Gaps = 11/1271 (1%)
Strand=Plus/Plus
Query 390 GGTTGTCTACAATGACAATTCATCTCTTATGTACCAATATCCTGGTTATGGATTCAACCC 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 379 GGTTGTCTACAATGACAATTCATCTCTTATGTACCAATATCCTGGTTATGGATTTAACCC 438
Query 450 TTATCCTTCTATAATGCTGGAGGGCCAAATTCCAGTCTCTCCAGCTTATTA-CC-C-ACC 506
|||||||||| ||||| ||||||| |||||||||||||| ||||||||||| || | |||
Sbjct 439 TTATCCTTCTGTAATGTTGGAGGGACAAATTCCAGTCTCCCCAGCTTATTACCCACAACC 498
Query 507 TTATGGTGCACCTTCTGCTATGCATTATATACCCTCAGATATTGACCCAACA--T-CTGC 563
|| ||||||||||||||| ||||||||| ||||||||||||||||||||||| | ||||
Sbjct 499 TTTTGGTGCACCTTCTGCAATGCATTATTTACCCTCAGATATTGACCCAACATCTGCTGC 558
Query 564 TTATATGATTCCTTTTGGGCAATATGGTGGAGCCAATTATTCCGGGAATCAAGGGGACAC 623
|||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||
Sbjct 559 TTATATGATTCCTTACGGGCAATATGGTGGAGGGAATTATTCCGGAAATCAAGGGGACAT 618
Query 624 CTCTTTAACATCTCATATACCTTATCCTCAAACGATGGGTATACTTGGGCCATATGACCA 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 619 CTCTTTAACATCTCATATACCTTATCCTCAAACGATGGGTATACTTGGGCCATACGACCA 678
Query 684 TACTGCTTCACAGGTACCGTTGCATGGGAGTGGGGTTGCTTCAAGCTCTTCTTTGGGAGG 743
|| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 679 TAATGCTTCACAGGTAGCGTTGCATGGGAGCGGGGTTGCTTCAAGCTCTTCTTTGGGAGG 738
Query 744 TTACTATCATGTAGGATCTTACCAGAGTCCCAACTCTATCTCCTCATATTATGGAGCTGA 803
||| |||||||||||||||||||||| ||| | ||||| | ||||||||||||||| |||
Sbjct 739 TTATTATCATGTAGGATCTTACCAGAATCCTAGCTCTACCCCCTCATATTATGGAGTTGA 798
Query 804 TAATCGAGCCAGATTAACCCCCGACCTAGGTAAACGGCGAGAGAAGGAGCAGGGCTCTGT 863
|||||||| |||||||||||| ||| |||||||| | ||||||||||| ||||||||| |
Sbjct 799 TAATCGAGTCAGATTAACCCCTGACATAGGTAAAAGACGAGAGAAGGATCAGGGCTCTAT 858
Query 864 ATCTATG-ACCAATGATCTGTATGGTAACCGAGGACCAAGGGCATCCAGCAGGGTAAAGA 922
||||| | |||| ||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 859 ATCTA-GCACCAGTGATCTGTATGGTAATCGAGGACCACGGGCATCAAGCAGGGTAAAGA 917
Query 923 GCAAAAACAGCTCTAAACTTTGCTCTACTACTGGTGATTCAACGAGTGATTCAAGTACCG 982
|||| |||||||| |||| ||||||||||| |||||||||| | || ||||||||||| |
Sbjct 918 GCAAGAACAGCTCCAAACCTTGCTCTACTATTGGTGATTCAGCAAGCGATTCAAGTACAG 977
Query 983 CTGGACCAAATCCCAGTTTGTACAACAACCCAGAATTTGTGATAGATTACAAGAATGCCA 1042
|||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||
Sbjct 978 CTGGACCAAATCCCAGTTTGTACAACCATCCAGAATTTGTGACAGATTATAAGAATGCCA 1037
Query 1043 AATTCTTTATCGTCAAGTCATTTAGTGAAGACAATGTCCACAGAAGTATCAAGTACAATG 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AATTCTTTATCGTCAAGTCATTTAGTGAAGACAATGTCCACAGAAGTATCAAGTACAATG 1097
Query 1103 TCTGGGCTAGCACACCGCATGGCAACAAAAAATTAGATACTGCTTATCGGGATGCTGAGA 1162
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1098 TCTGGGCCAGTACACCGCATGGCAACAAAAAATTAGACACTGCTTATCGGGATGCTGAGA 1157
Query 1163 AGATGGGTGGAAAGTGTCCAATCTTTCTGTTCTTTTCGGTAAATGCTAGTGGACAATTCT 1222
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AGATGGGAGGAAAGTGTCCAATCTTTCTGTTCTTTTCGGTAAATGCTAGTGGACAATTCT 1217
Query 1223 GTGGGGTGTCGGAAATGGTTGGACCTGTAGATTTTGAAAAGGATGCTGGTTACTGGCAGC 1282
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GTGGGGTGTCAGAAATGGTTGGACCTGTAGATTTTGAAAAGGATGCTGGTTACTGGCAGC 1277
Query 1283 AAGACAGGTGGAGTGGGCAGTTCCCAGTGAAATGGCATATTGTGAAAGATATACCGAATA 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AAGACAGGTGGAGTGGGCAGTTCCCAGTGAAATGGCATATTGTGAAAGATATACCGAATA 1337
Query 1343 ACCGATTTTGTCATATTCTTTTACAAAACAATGACAACAAGCCGGTTACGCACAGCCGAG 1402
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1338 ACCGATTTTGTCATATTCTTTTACAAAACAATGACAACAAGCCGGTAACGCACAGCCGAG 1397
Query 1403 ATTCTCAGGAGGTGAAGCTGCGTCAAGGGATTGAGATGCTTAGAATTTTCAAAGAATATG 1462
||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
Sbjct 1398 ATTCTCAGGAGGTGAAGCTACGCCAGGGGATTGAGATGCTTAGAATTTTCAAAGAATACG 1457
Query 1463 AGGCACACACATCAATCCTCGATGATTTCGGCTACTATGATGAGTTAGAGGGGCAAAAGG 1522
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 AGGCACACACATCAATCCTTGATGATTTCGGCTACTATGATGAGTTAGAGGGGCAAAAGG 1517
Query 1523 TGGGAGAAGATGGAACAAGGAAAGAAGCTAGGGAAGAAGAGACCTCCGTGGAGCAGTTAT 1582
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 1518 TGGGAGAAGATGGAACAAGGAAAAAAGCTGGGGAAGAAGAGACCTCCGTGGAGCAATTAT 1577
Query 1583 CAGAGCGTCTTCAAGCTGTCACAGTAGAAGATGGCAAGGAGGA--AAAAGAA-GAGTTAA 1639
||||||| ||||||||||||| |||||||||||| |||||||| |||| || |||||||
Sbjct 1578 CAGAGCGCCTTCAAGCTGTCAAAGTAGAAGATGGGAAGGAGGAGGAAAAAAAAGAGTTAA 1637
Query 1640 TAGCTGATTGA 1650
|||||||||||
Sbjct 1638 TAGCTGATTGA 1648
Score = 435 bits (235), Expect = 9e-121
Identities = 297/325 (91%), Gaps = 11/325 (3%)
Strand=Plus/Plus
Query 1 ATGGATCCCG---CTTCTTCTTCCTCAAATCAGCGCAACCGAATCGTCTCTTCTGGGGAA 57
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 ATGGATCCCGCTTCTTCTTCTTCCTCAAATCAGCGCAACCGAATCGTCTCTTCTGGGGAA 121
Query 58 AGACCAGTGATGGCCGATAATGGCGTCC-A-A-CAGGTTTCTCACGAAGACGAAAGGAAC 114
|||||||||||||| ||||||||||||| | | |||||||||||||| || | |||||||
Sbjct 122 AGACCAGTGATGGCTGATAATGGCGTCCAACAGCAGGTTTCTCACGACGATGGAAGGAAC 181
Query 115 ATTGTttcttcttcttattcttcttcttcAATTGTTCCTTCTCCTGATCCCGCTCCTTAT 174
||||||||||| |||||| |||||| | | |||||||||||||||||||||||||||
Sbjct 182 ATTGTTTCTTCGTCTTATAGTTCTTC--C-GTGGTTCCTTCTCCTGATCCCGCTCCTTAT 238
Query 175 TATAACGTTCTTCAAACCCCTACCAATCTCTATCACTACGATTGGGATGTCGCACATTCT 234
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 239 TATAACGTTCTTCAAACCCCTACCAATCTCTATCACTACGATTGGGATATCGCAAATTCT 298
Query 235 GGTTACGCACAAGGCATCAATAGTTGGGATGGTTATCCACGATATGCTGCTACTACCCCT 294
|| || |||||||||||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 299 GGCTATGCACAAGGCATCAATACTTGGGATGGATATCCACGATATGCTACTACTACCCCT 358
Query 295 GAAGGCC-TGCATGTCCCACCGGTT 318
|||| || ||||||| |||||||||
Sbjct 359 GAAG-CCATGCATGTGCCACCGGTT 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5