BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332123
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58360.1 | Symbols: ATOFP3, OFP3 | ovate family protein 3 | ... 1134 0.0
> AT5G58360.1 | Symbols: ATOFP3, OFP3 | ovate family protein 3
| chr5:23590079-23590969 REVERSE LENGTH=891
Length=891
Score = 1134 bits (614), Expect = 0.0
Identities = 804/891 (90%), Gaps = 32/891 (4%)
Strand=Plus/Plus
Query 1 ATGAATCAGAAAATGGGGACTCACAAGTTCAGATTTTCAGACATTATGCCTCATTCATGG 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAACAGAAAATGGGGACTCACAAGTTCAGATTTTCAGACATGATGCCTCATTCATGG 60
Query 61 ATCTATAAGCTCAAAGGGATGAGTAGAAGTAGCAGAAAACACCATCCTTCTTCTCCTAAA 120
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||
Sbjct 61 CTCTATAAGCTCAAAGGGATGAGCAGAAGTAGCAGAAAACACCATCTTTCTTCTCCCAAA 120
Query 121 CACCTCTCTTCCGCTGATGCTTCTTCCTCAAGAAAGCTCCGTGACCCTCATCGACGTCTT 180
|| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 121 CATCTCTCCTCCGCTGATGCTTCTTCCTCAAGAAAGCTCCGGGACCCTCTTCGACGTCTT 180
Query 181 TCTTCGACTGCTAATCATCCTCAAGTTTCTAATTCACCTCCAAAATCTTCTTCTTTCAAG 240
|||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 181 TCTTCGACTGCTCATCATCCTCAAGCTTCTAATTCACCTCCCAAATCTTCTTCTTTCAAG 240
Query 241 AGAAAAATCAAACGTAAAACCATTTACAAGCCTTCCTCAAGGCTCAAGCTCTCTACATCT 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 241 AGAAAAATCAAACGTAAAACCGTTTACAAGCCTTCCTCAAGGCTCAAGCTCTCTACCTCT 300
Query 301 TCTTCTCTAAATCATCGTTCTAAATCATCATCCTCTGCAAATTCAATCTCTGATTCCGTC 360
|| |||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| |
Sbjct 301 TCCTCTCTAAATCATCGCTCTAAGTCATCATCCTCTGCAAATGCAATCTCCGATTCCGCC 360
Query 361 GTTGGAAGCTCCTTAGATCGTGTATCATCTCCTTCTGACCAAAAATTT-TACCATGATCC 419
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 361 GTTGGAAGCTTCTTAGATCGTGTATCATCTCCTTCTGACCAAAACTTTGTAC-ATGATCC 419
Query 420 TGAACTGCATTCA--A-TTGACATTAAGGACGACCGCTCTGTGAAGAAGCTTGATGATGT 476
||||| ||||||| | |||||||||||||||| | |||||||| |||||||||||||||
Sbjct 420 TGAACCGCATTCATCAATTGACATTAAGGACGAGCTCTCTGTGAGGAAGCTTGATGATGT 479
Query 477 ATCTGAAGATCCTTCA-TTCTCACCAAACTTGAGTCCTCTTCAGGTTGAGACTGCAAAGG 535
|||||||||||||| || |||||||||||||||||| | ||||||||||||
Sbjct 480 GCCTGAAGATCCTTCAGTT-TCACCAAACTTGAGTCCT-----G----AGACTGCAAAGG 529
Query 536 AACCACCCTTTAAGATGATTACACAGCAGGATCTGAAGAAACCGAATGCTCGTTCGACAG 595
||||||||||| ||||||| ||||||||| | |||||||||||||| |||| |||| |||
Sbjct 530 AACCACCCTTTGAGATGATGACACAGCAGAAACTGAAGAAACCGAAAGCTCATTCGTCAG 589
Query 596 GGATAAAGATTCGGTCAAATTCTCCCAAGATCGCGAGAAAGAAGACAAAGGGAAATA-CG 654
|||||||||||| || | ||||||| ||||||||||| ||||| ||| | ||
Sbjct 590 GGATAAAGATTCC--CA----CG---AAGATCGTGAGAAAGAAGAAAAAGG-AAAGAACG 639
Query 655 -CC--GGTATCGAAGAAGAAGGGGACTGTAAAGAG-TTTCGCCATAGTTCTGTCTTCAGT 710
|| |||||||||||| |||||| ||||||||| ||| || |||||||||||||| ||
Sbjct 640 TCCCAGGTATCGAAGAAAAAGGGGGTTGTAAAGAGCTTT-GCGATAGTTCTGTCTTCGGT 698
Query 711 GGATCCTGAGAAAGATTTCAGAGAATCCATGGTTGAGATGATCATGGAAAACAAGATGAG 770
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 699 GGATCCTGAGAAAGATTTCAGAGAATCCATGGTTGAGATGATTATGGAGAACAAGATGAG 758
Query 771 GGAACAAAAAGACCTGGAAGATCTTCTCGCATGTTACCTTTCACTGAATTCGAGCGAGTA 830
|||||| ||||| |||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 759 GGAACAGAAAGATCTGGAAGATCTTCTAGCATGTTATCTTTCATTGAATTCGAGCGAGTA 818
Query 831 TCATGATGTTATCATCAAGGCTTTCGAGAAAACATGGTTACATTTGACTCA 881
|||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 819 TCATGACGTTATCATCAAGGCTTTCGAGAATACATGGTTACATTTGACTCA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5