BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332145
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58560.1 | Symbols: | Phosphatidate cytidylyltransferase fa... 1096 0.0
AT5G58575.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sgf11, tr... 782 0.0
AT5G58570.1 | Symbols: | unknown protein; Has 30201 Blast hits... 195 1e-48
> AT5G58560.1 | Symbols: | Phosphatidate cytidylyltransferase
family protein | chr5:23670395-23672877 FORWARD LENGTH=1349
Length=1349
Score = 1096 bits (593), Expect = 0.0
Identities = 759/836 (91%), Gaps = 23/836 (3%)
Strand=Plus/Plus
Query 7 ACTACTACTAAGctctccgttctctgctgctctttcatttcatctcctctcattgactct 66
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 134 ACTACTACAAAGCTCTCCGTTCTCTGCTGCTCTTTCATTTCATCTCCTCTCGTTGACTCT 193
Query 67 cctccttctccCGCCAACATCCCTCGCTTCTTCTCTCCGATTCCACGA-T-TCC---TCA 121
|||||||||| |||| | || ||| | ||| | ||||||| | | | ||| ||
Sbjct 194 CCTCCTTCTCTCGCCTTCTTCTCTC-C-GATTC-C-ACGATTCCTC-ACTGTCCGAATCG 248
Query 122 CTACTAGCTTTAGATCGAGCTCTAGGTTTCCGGCGACCGAAATCCGTAAGTC-T-ACTCG 179
| |||||||||||||||||||||||||||||||| ||| ||||||| ||||| | |||||
Sbjct 249 CGACTAGCTTTAGATCGAGCTCTAGGTTTCCGGCCACCAAAATCCGCAAGTCTTCACTCG 308
Query 180 GAGTC-TAACGACGT-C-G--TCTTCCACTCGCCGC-CATGTCTGCGCGTTTGGAGTCAC 233
| | | | | | | | || | | | ||||||||||||||||||||||
Sbjct 309 CCGCCGTGATG-TTTCCGGAAAATT-CGGTTTTATCAGATGTCTGCGCGTTTGGAGTCAC 366
Query 234 TAGCATCGTTGCGTTCTCTTGCCTCGGTTTCTGGGGAGAGATTGGCAAACGTGGCCTCTT 293
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 367 TAGCATCGTTGCGTTCTCGTGCCTCGGTTTCTGGGGAGAGATTGGCAAACGTGGCATCTT 426
Query 294 GGACCAGAAACTCATCCGGAAGCTTGTGCATATAAATATTGGGCTAGTTTTTATGCTTTG 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CGACCAGAAACTCATCCGGAAGCTTGTGCATATAAATATTGGGCTAGTTTTTATGCTTTG 486
Query 354 CTGGCCGCTGTTCAGTTCTGGAATCCAAGGAGCACTTTTTGCATCTCTTGTACCTGGACT 413
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 487 CTGGCCGCTGTTCAGTTCTGGAATCCAAGGAGCACTTTTCGCATCTCTTGTACCTGGACT 546
Query 414 CAATATAATAAGGATGCTATTGCTGGGGCTTGGAGTGTACCACGACGAAGGAACGATCAA 473
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 547 CAATATAGTAAGGATGCTATTGCTGGGGCTTGGAGTGTACCACGACGAAGGAACAATCAA 606
Query 474 GTCAATGAGCAGACATGGAGATCGCAGGGAACTACTTAAGGGACCGCTTTACTATGCACT 533
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 607 GTCAATGAGCAGACATGGAGATCGCAGGGAACTACTTAAGGGGCCGCTTTACTATGTACT 666
Query 534 GTCAATCACATCAGCCTGCATCTTCTATTGGAAGTCATCCCCAATCGCCATTGCAGTCAT 593
||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| || ||
Sbjct 667 GTCAATCACATCAGCCTGCATCTACTATTGGAAATCATCCCCAATCGCGATTGCGGTGAT 726
Query 594 ATGCAACCTTTGCGCAGGAGATGGTATGGCTGACATCGTGGGTCGGCGGTTTGGAACAGA 653
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 727 ATGCAACCTTTGCGCAGGAGATGGTATGGCTGACATTGTGGGTCGGCGGTTTGGAACAGA 786
Query 654 GAAGCTTCCTTACAACAAAAACAAATCATTTGCTGGTAGCATTGGAATGGCCACCGCGGG 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 787 GAAGCTTCCTTACAACAAAAACAAATCATTTGCTGGTAGCATTGGAATGGCCACCGCCGG 846
Query 714 GTT-CTTAGCATCTGTTGGGTATATGTTCTACTTTGCTTCATTCGGTTACATCAAGGATA 772
||| || ||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||
Sbjct 847 GTTTCT-AGCATCTGTTGCGTATATGTACTACTTTGCTTCATTTGGTTACATCGAGGATA 905
Query 773 GCGGGGGAATGATTCTTCGTTTCCTCATCATCTCTTTAGCATCAGCTCTTGTCGGA 828
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 906 GCGGGGGAATGATTCTTCGTTTCCTCGTCATCTCTATAGCATCAGCTCTTGT-GGA 960
> AT5G58575.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Sgf11,
transcriptional regulation (InterPro:IPR013246); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:23674000-23675498 FORWARD LENGTH=956
Length=956
Score = 782 bits (423), Expect = 0.0
Identities = 479/507 (94%), Gaps = 0/507 (0%)
Strand=Plus/Plus
Query 1018 CTTTCGTCCCAAGTTTTTCTTGATCTTGTGGATTCGGTGATTGCTGATGTAGCATCTGAG 1077
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 176 CTTTCGTCCCAAATTTTTCTTGATCTTGTGGATTCGGTGATAGCTGATGTAGCATCTGAG 235
Query 1078 TGTCATCGGGTAGCACGACTAGGACTTGATCGTGATTTGGAGGTAGTAGAAGAAGAGTTG 1137
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 TGTCATCGGGTAGCACGACTAGGACTTGATCGTGATTTGGATATAGTAGAAGAAGAGTTG 295
Query 1138 AGGTTGTCAGTGGAAGCGTGTGCTAAGGTCGCTGATCCTAGCAACAACCTTGAAACCAAC 1197
|| ||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||
Sbjct 296 AGATTGTCAGTGGAAGCGCGTGCGAAGATCGCTGATCCTAGCAACAACCTCGAAACCAAC 355
Query 1198 ACCAAATTTGTTGTTGATATTTTTGGTCAGACTCACCCTCCTGTAGCTACTGAAGTGTTC 1257
||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 356 ACCAAATATGTTGTTGATATATTTGGGCAGACTCACCCTCCTGTAGCTAGTGAAGTGTTC 415
Query 1258 AATTGCATGAACTGTGGGCGACAAATTGTTGCAGGAAGGTTTGCTCCTCATTTGGAAAAA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 416 AATTGCATGAACTGTGGGCGACAAATTGTTGCAGGAAGGTTTGCTCCTCATCTCGAAAAA 475
Query 1318 TGCATGGGGAAGGGAAGAAAGGCTCGTGCCAAGACAACCAGGAGCACAACAGCTGCCCAG 1377
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 476 TGCATGGGAAAGGGAAGAAAGGCTCGTGCCAAGACAACCAGAAGCACAACGGCTGCACAG 535
Query 1378 AACAGGAACGCACGACGCAGCCCAAATCCGCGATATTCTCCTTATCCAAATTCTGCTAGT 1437
||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 536 AACCGGAATGCACGACGCAGCCCCAATCCACGATATTCTCCTTATCCAAATTCTGCTAGT 595
Query 1438 GAGAACCAGTTAGCAAGTGGATCACCTGGTGTTGCTGGTGAAGACTGCTCAAATGGCACA 1497
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 596 GAGAACCAGTTAGCAAGTGGATCACCTGGTGTTGCAGGTGAAGACTGCTCAAATTTCACA 655
Query 1498 GTCCGAGAGAATGTGAAAGGAGACTGA 1524
|| |||||||| |||||||||||||||
Sbjct 656 GTTCGAGAGAACGTGAAAGGAGACTGA 682
> AT5G58570.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23672695-23673287
REVERSE LENGTH=593
Length=593
Score = 195 bits (105), Expect = 1e-48
Identities = 121/129 (94%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 823 GTCGGACTGGTGACTGTAACGGCGTTTCAGACAAGGAAGCAATACAAGGAACAAGAGAAA 882
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 343 GTCGGACTGGTGACTGTAACGGCGTTTCAGACAAGGAAGCAACACGAGGAACAAGAGGAA 284
Query 883 GAGGGCAAACCCGATGACAAGAACTACTGTCAAGATCTCACCATGCATGGCGTAGTGTCT 942
|| ||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 283 GACGGCGAAGCTGATGACAAGAACTACCGTCAAGATCTCACCATGCATGGCGTAGTGTCT 224
Query 943 GTCTCTAGT 951
|||||||||
Sbjct 223 GTCTCTAGT 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5