BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332172
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62850.1 | Symbols: | zinc finger protein-related | chr3:23... 658 0.0
> AT3G62850.1 | Symbols: | zinc finger protein-related | chr3:23237487-23239155
REVERSE LENGTH=1419
Length=1419
Score = 658 bits (356), Expect = 0.0
Identities = 942/1213 (78%), Gaps = 87/1213 (7%)
Strand=Plus/Plus
Query 13 GCGGCGGAGCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATTG-TGGACTG 71
|||||| ||||| | ||||||| |||| ||||||| ||||||||||||| || ||||||
Sbjct 16 GCGGCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGGGACA-TGAAGGACTG 74
Query 72 TCCGATTCCCGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAA 131
||||||||| ||||||||||| |||| || |||||||||||| ||||||| |||||||||
Sbjct 75 TCCGATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCATAGAAGCGGCGTTCAA 134
Query 132 -GAAACTAGGCTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCAAACACAAACCC 190
| |||||||||||||||||||| |||||||||| | |||||| ||||||| | ||||||
Sbjct 135 TG-AACTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGACCAAAGAGAAACCC 193
Query 191 C-TGATAATCTCCTGCGAGGGCTCTCTTCCACTGGAGTCGATGTTGCACATACCATTA-C 248
| || | | |||||||||||||||||||||| ||||||| ||| ||||| | || || |
Sbjct 194 CTTG-TCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGCTGTAGCACAAATCA-TACC 251
Query 249 CGAAAGCACATGCGCTCTCATGTATTCGGA-TATGGTGGAATGGCGACG-TCATATTCCT 306
|||||||| |||| | ||||||||||| || |||| |||| |||||| | || || ||||
Sbjct 252 CGAAAGCAGATGCTCACTCATGTATTC-GAGTATGCTGGAGTGGCGA-GATCTTAATCCT 309
Query 307 CCTCCGGCGACAATGATGTTCATATCCAATCAGGTGG-ACCATGTCTTCTCATT-GGATC 364
|||||||| ||||||||| || ||||| |||| |||| | ||||||||| | || |||||
Sbjct 310 CCTCCGGCTACAATGATGCTCGTATCCGATCA-GTGGCAGCATGTCTTCGC-TTGGGATC 367
Query 365 TGGCCCGGCTACAACAAGAGACGCAATACAACCTCTTTCTGGCTTACTC-GGTTAGTTCT 423
|| |||| ||||||||| | ||| |||||||||| ||||||||||| || | || ||
Sbjct 368 TGTCCCGTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCAACTGAG-CCT 426
Query 424 AAAGCCA--TACCAGCTCTTGAGA-CTTCTGCAGAGTGGCGCTGGA-ACAATTTACTAAA 479
| || | | || | ||||| ||| || ||||||| ||||| | ||||||||
Sbjct 427 TTCG-CAGGT-TCGGCAC-TGAGACCTTGTGGAGAGTGGATCTGGAGA-AATTTACT--- 479
Query 480 GTCGAAGACGAAGAAGACCAGAGTGGTT-A--A-AA-TATATGAAGAAGAAG-AAAGTGA 533
| | |||| || ||| | | | ||| | | || | | | || || | | || |
Sbjct 480 -T-G-AGACCAA-AAG-GGA-ATTTGTTCAGGACAAGTGCA-GCAGCAGTTGTGAGGT-A 531
Query 534 CCGTGCCATGTTTTATTGTAAATCGTGCGATTTCGATTGCCAAAGC-TTGAGGGAACTCA 592
| | ||||||||||||| ||||| ||| || | | |||||||| | ||||| |||
Sbjct 532 TC-TCCCATGTTTTATTGCAAATCTTGCTCTTACCAGGGCCAAAGCGTGGAGGG-TTTCA 589
Query 593 GGAAGCATCTCTCGAGTAGATATCATGCAATGGGAGAACTTTTATGCCCTACTGC-TACA 651
||| |||| |||||||| || | |||||| || ||| || | || || | | | ||
Sbjct 590 GGAGGCATGTCTCGAGTGGAAAGCATGCAGTGAAAGAGGTTACAAACCGTA-TACATCCA 648
Query 652 GAAATT-TCTCCTGTAACGATGAAGTGGGGAAGGAACTTCCCGGCCAAGCCTGAATACGC 710
||| || || | | |||| || ||||| || ||||| | | || |||||||| |||||
Sbjct 649 GAACTTGACT-ATTTGACGAGGACGTGGGCAAAGAACTACACTGCGAAGCCTGAGTACGC 707
Query 711 CACAGCTAAAATTCTGGTGTTGTGGGACATTG-TGGACTGTCCGATTCCCGAGGGTTATG 769
|||||| ||| |||||| |||||||| || ||||||||||||||| ||||||||||
Sbjct 708 GACAGCTCCAATAGTGGTGTGGTGGGACA-TGAAGGACTGTCCGATTCCAGAGGGTTATG 766
Query 770 AAGTTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 829
| | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 767 ATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 826
Query 830 CTGTCTCCATCACCGCCTATGGCGACCA-ATCACAAACCCCTGATCATC-TCCTGCGAGG 887
||||||||||||||| | ||||||||| | || ||||||||||||| | |||||||||
Sbjct 827 CTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTGATCA-CATCCTGCGAGA 884
Query 888 GCTCTCTTCCACTGGAGTCGCTGTTTCACATGCCATT-ACCGAAGTCAGATACAGAAGAA 946
|||||||||||||||||||| | || ||||| |||| || ||||||| |||||| | |
Sbjct 885 GCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GAAGTCATATACAGTCGCA 943
Query 947 TGTTT-TACGATTTGATTC-GATGGCAA-CACCTTAATCCTCCTCCAGCTACAATCATGC 1003
||||| || || ||| | | ||| || | | | ||||||||||| |||||||||||||
Sbjct 944 TGTTTATAA-ATATGAAGCAG-TGGAAAGCTCGT-AATCCTCCTCCGGCTACAATCATGC 1000
Query 1004 TCATATCCGATCATATAGAGGATTAC-TTCTCAACTTTTGTTGCCGGTCTT-CAACAATG 1061
||||||||||| | | | | || | ||| || ||| | |||| ||| | |||| |
Sbjct 1001 TCATATCCGATGGTGTGGTG-ATGATGTTCGAAAATTTAATCGCCGA-CTTACTACAA-G 1057
Query 1062 TTGTATTAAATATAAATACAACATGTTCCTGGCTTATTCATTTAGGCCTAACAAAATGT- 1120
| | || || || | | | ||| |||||||||| | |||||| |||||||||
Sbjct 1058 A-G-ACGAAGTACAA---C--CTTTTTC-TGGCTTATTCGTACAGGCCTTACAAAATGTC 1109
Query 1121 TAGCCCT-CGTCACCTCTGCAGAGTGGCTCTGGGAAAGCTTACT-G--GAAGGTGTTTAT 1176
| | ||| | |||| |||||||||||||| ||| |||||||||| | | |||||||| |
Sbjct 1110 T-GTCCTGC-TCACTTCTGCAGAGTGGCTTTGGAAAAGCTTACTTGTTGCAGGTGTTT-T 1166
Query 1177 TTGTCCTCCTCTC 1189
|| || |||||||
Sbjct 1167 TT-TC-TCCTCTC 1177
Score = 300 bits (162), Expect = 3e-80
Identities = 334/413 (81%), Gaps = 28/413 (7%)
Strand=Plus/Plus
Query 16 GCGGAGCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATTG-TGGACTGTCC 74
||| ||||| | |||||||||||| ||||| |||||||||||||| || |||||||||
Sbjct 691 GCGAAGCCTGAGTACGCGACAGCTCCAATAGTGGTGTGGTGGGACA-TGAAGGACTGTCC 749
Query 75 GATTCCCGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAA 134
|||||| ||||||||||| |||| || ||||||||||||| |||||||||||||||||||
Sbjct 750 GATTCCAGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAA 809
Query 135 ACTAGGCTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCA-AACACAAACCCCTG 193
|||||||||||||||||||||||||||||| | | ||||||||| |||| |||||||||
Sbjct 810 ACTAGGCTACTCTGGTCCTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTG 868
Query 194 ATAATC-TCCTGCGAGGGCTCTCTTCCACTGGAGTCGATGTTGCACATACCATT-ACCGA 251
|| | | ||||||||| |||||||||||||||||||||| |||||||| |||| || ||
Sbjct 869 ATCA-CATCCTGCGAGAGCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GA 926
Query 252 AAG-CACATGC-GCTCTCATGTATTCGGA-TATGGTGGAATGGCGA-CGTCATATTCCTC 307
| | || || | | || ||||| || | |||| | | ||| | | || || |||||
Sbjct 927 A-GTCATATACAG-TCGCATGT-TTATAAATATGAAGCAGTGGAAAGC-TCGTAATCCTC 982
Query 308 CTCCGGCGACAATGATGTTCATATCCAATCAG-GTGGACCATG-TCTTCTCA--TTGGAT 363
||||||| ||||| ||| |||||||| || | |||| ||| | ||| | || ||
Sbjct 983 CTCCGGCTACAATCATGCTCATATCCGATG-GTGTGGTG-ATGATGTTCGAAAATTTAAT 1040
Query 364 CTGGCCCGGCT-ACAACAAGAGACGCAA-TACAACCTCTTTCTGGCTTACTCG 414
| | || | || || |||||||||| || |||||||| ||||||||||| |||
Sbjct 1041 C-G-CC-GACTTACTACAAGAGACG-AAGTACAACCTTTTTCTGGCTTATTCG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5