BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332253
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59830.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1984 0.0
> AT5G59830.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G13660.2);
Has 174 Blast hits to 139 proteins in 16 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:24105090-24107233
FORWARD LENGTH=1632
Length=1632
Score = 1984 bits (1074), Expect = 0.0
Identities = 1192/1250 (95%), Gaps = 4/1250 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACAATGAGCATACAAGTGAGGATGATTCAGTGTATGATCAGTCAACAAGAGAT 60
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 223 ATGAAGAATAATGAGCATACAAGTGAGGAAGATTCAGTGTATGATCATTCAACAAGAGAT 282
Query 61 GATTCAAAGCGTCCTCATCCTTGGTTTGTTGATTCTTCTCGCTCTGAGATGTTCCCAAAC 120
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 283 GATTCAAAGCGTCCTCATCCTTGGTTTGTTGATTCTTCTCGTTCAGAGATGTTCCCAAAC 342
Query 121 AAGAAACAAGCTGTGCAAGATTCAGTAGGAGGATTAGGAAAATCAAATGTAGGTCTTCCC 180
||||||||||||||||||||| | || | ||||||||||||||||||||| ||||||||
Sbjct 343 AAGAAACAAGCTGTGCAAGATCCTGTTGTAGGATTAGGAAAATCAAATGTTGGTCTTCCT 402
Query 181 TTGTGGGAAAGCTCATCAGTTTTTCAATCTGTTTCTAACCAGTTCATGGATCGGCTTCTT 240
||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 403 TTGTGGGAAAGCTCATCGGTTTTTCAGTCTGTTTCTAACCAGTTTATGGATCGGCTTCTA 462
Query 241 GGAGCTGAAATGCCGCCCAGACCCCTTTTGTTTGGTGATAGAGATAGAACGGAAGGTTGT 300
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 463 GGAGCTGAAATGCCTCCAAGACCTCTTTTGTTTGGTGATAGAGATAGAACGGAAGGTTGT 522
Query 301 AGCCACCACCACCAGACTAAGAGTATAGCTGAGAGTTATATGGAAGATACATCTGTTGAA 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGCCACCACCACCAGAATAAGAGTATAGCTGAGAGTTATATGGAAGATACATCTGTTGAA 582
Query 361 TTGTCGATATCTAATGGCGTGGAGGTTGCTGGGAGTTCTTTTGGTGGTGATGGAATTAGA 420
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 583 TTGTCGATATCTAATGGCGTGGAGGTTGCTGGGGGTTGTTTTGGTGGTGATGGAAATAGA 642
Query 421 AAACTTCCCGTTAGTCGGGTTAAGGAAACTATGAGTACACATGTTGCTTTAGACA-GTCA 479
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 643 AAACTTCCGGTTAGTCGGGTTAAGGAAACGATGAGTACACATGTTGCTTTAGA-AGGTCA 701
Query 480 TAATCAAAGGAAAATCGAGTCATCTTCTATACAAGCTTGTAGCCGGGAAAACGAAAGTAG 539
|| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 702 TAGTCAAAGGAAAATCGAGTCGTCTTCGATACAAGCTTGTAGCCGGGAAAACGAAAGTAG 761
Query 540 CTTTATAAATTTTGCACTGGCAGGTCATCCTTATGGCAATGAGGACTCTCATGGGATCAC 599
|| ||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||
Sbjct 762 CTATATAAATTTTGCACTAGCGGGTCATCCCTATGGCAATGAGGACTCTCAGGGGATCAC 821
Query 600 ATTTGGTGAAATAAACGATGAACATGGTGTTGGCTCCACTTCCAATGTGGTTGGAAACTA 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 822 ATTTGGTGAAATAAACGATGAACATGGTGTTGGCTCTACTTCCAATGTGGTTGGAAACTA 881
Query 660 TCAATCATATGTTCAAGACCCAATTGGAACATTGGATATTGTTTATGGCCAAGAAACTGA 719
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 882 TCAATCATATGTTCAAGACCCAATTGGAACATTGGATATTGTTTATGACCAAGAAACTGG 941
Query 720 GAGTTCACAGACCAGCAGCGGAGTTGTAAGCGAACAACAAGTTGCTAAACCGAGTTT-GG 778
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 942 GAGTTCACAAACCAGCAGCGGAGTTGTAAGCGAACAACAAGTTGCTAAACCGAGTTTAGG 1001
Query 779 AACCAGTTCCAAAGAACAAAGCAGAGGCCAAGTCATCAAAGAAGGAAGCTTCCACAAGCT 838
| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 -ATCACTTCCAAAGACCAAAGCAGAGGCCAAGTCATCAAAGAAGGAAGCTTCCACAAGCT 1060
Query 839 TTCCTTCAAACGTCAGAAGCTTAATATCAACCGGTATGCTCGATGGCGTTCCTGTGACGT 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1061 TTCCTTCAAACGTCAGAAGCTTAATATCAACCGGTATGCTCGATGGTGTTCCTGTGAAGT 1120
Query 899 ATGTTTCTATCTCACGTGAGGAGCTTCGAGGAGTCATCAAAGGATCAGGTTATCTCTGCG 958
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1121 ATGTTTCTGTCTCACGTGAGGAGCTTCGAGGAGTCATCAAAGGATCGGGTTATCTCTGCG 1180
Query 959 GATGTCAAACTTGTGAATTCACAAAGGTGCTTAACGCGTATGCATTCGAGAGACACGCTG 1018
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1181 GATGTCAAACTTGCGATTTCACAAAGGTGCTTAACGCGTATGCATTCGAGAGGCACGCTG 1240
Query 1019 GATGTAAAACAAAGCATCCAAACAATCATATTTACTTTGAAAATGGGAAGACCATTTATC 1078
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1241 GATGTAAAACAAAGCATCCAAACAATCATATTTACTTTGAAAACGGGAAGACGATTTATC 1300
Query 1079 AGATAGTTCAGGAACTGAGGAACACTCCAGAGAGTATACTGTTTGATGTGATTCAGACTG 1138
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1301 AGATAGTTCAGGAACTGAGGAACACTCCAGAGAGCATACTGTTTGATGTGATTCAGACTG 1360
Query 1139 TATTTGGTTCTCCTATCAACCAGAAAGCATTTCGCATCTGGAAAGAATCATTCCAAGCTG 1198
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1361 TATTTGGTTCTCCTATCAACCAGAAAGCATTTCGCATATGGAAAGAATCATTCCAAGCGG 1420
Query 1199 CGACTAGGGAACTTCAGCGGATCTATGGCAAAGAAGAGCGCTCCTTTTGA 1248
||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1421 CGACTAGAGAACTTCAGCGGATCTATGGCAAAGAAGAGCGTTCCTTCTGA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5