BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332256
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59850.1 | Symbols: | Ribosomal protein S8 family protein |... 660 0.0
AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D | chr... 505 1e-142
> AT5G59850.1 | Symbols: | Ribosomal protein S8 family protein
| chr5:24112200-24113617 REVERSE LENGTH=803
Length=803
Score = 660 bits (357), Expect = 0.0
Identities = 381/393 (97%), Gaps = 0/393 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAGAATCAGTGTGCTTAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 112 ATGGTGAGAATCAGTGTGCTTAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 171
Query 61 GGGAAGAGGCAAGTCATGATCAGGCCATCTTCTAAAGTGATCATCAAGTTTCTTATCGTC 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 172 GGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTC 231
Query 121 ATGCAGAAACACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGTAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 232 ATGCAGAAACACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAG 291
Query 181 ATTGTGGTTGAGCTCAATGGAAGACTAAACAAATGTGGAGTCATCAGTCCTCGTTTTGAT 240
|| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 292 ATCGTGGTCGAGCTTAATGGAAGACTTAACAAATGTGGAGTCATCAGTCCTCGTTTCGAT 351
Query 241 GTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCTAGACAGTTTGGA 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 352 GTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCCAGACAGTTTGGG 411
Query 301 TACATTGTTCTTACGACTTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAAT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAAT 471
Query 361 GTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 393
|||||||||||||||||||||||||||||||||
Sbjct 472 GTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 504
> AT3G46040.1 | Symbols: RPS15AD | ribosomal protein S15A D | chr3:16914539-16915759
FORWARD LENGTH=743
Length=743
Score = 505 bits (273), Expect = 1e-142
Identities = 354/394 (90%), Gaps = 2/394 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGAATCAGTGTGCTTAATGATGCTCTTAAGAGTATGTACAATGCTGAGAAGAGA 60
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 121 ATGGTGAGAATCAGTGTGCTCAATGATGGTCTTAAGAGTATGTACAATGCAGAGAAGAGA 180
Query 61 GGGAAGAGGCAAGTCATGATCAGGCCATCTTCTAAAGTGATCATCAAGTTTCTTATCGTC 120
|| |||||||| || ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 181 GGAAAGAGGCAGGTTATGATCAGGCCTTCTTCTAAAGTTATCATCAAGTTCCTTATCGTC 240
Query 121 ATGCAGAAA-CACGGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGTAA 179
||||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 241 ATGCA-AAAGCACGGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAA 299
Query 180 GATTGTGGTTGAGCTCAATGGAAGACTAAACAAATGTGGAGTCATCAGTCCTCGTTTTGA 239
|||||| |||||||| |||||||| || ||||| |||||||| |||||||||||||| ||
Sbjct 300 GATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCGTTTCGA 359
Query 240 TGTTGGAGTTAAGGAGATTGAAGGCTGGACCGCTCGTCTTCTTCCTTCTAGACAGTTTGG 299
||| || ||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 360 TGTCGGTGTTAAGGAGATTGAAGGATGGACTGCTCGTCTACTTCCTTCCAGACAGTTTGG 419
Query 300 ATACATTGTTCTTACGACTTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAA 359
| ||||||||| ||||| || || || || ||||| || |||||||| |||||||||||
Sbjct 420 TTTCATTGTTCTGACGACCTCAGCGGGAATCATGGATCATGAAGAAGCTAGGAGAAAGAA 479
Query 360 TGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGA 393
||||||||||| |||||||| ||||||||||||
Sbjct 480 CGTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGA 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18548799381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5