BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332260
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59890.1 | Symbols: ADF4, ATADF4 | actin depolymerizing fact... 682 0.0
AT5G59880.1 | Symbols: ADF3 | actin depolymerizing factor 3 | c... 403 6e-112
> AT5G59890.1 | Symbols: ADF4, ATADF4 | actin depolymerizing factor
4 | chr5:24122412-24123912 FORWARD LENGTH=869
Length=869
Score = 682 bits (369), Expect = 0.0
Identities = 389/399 (97%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGTCCATGATGACTGCAAGCTGAGATTTCTGGAACTTAAGGCGAAAAGGACACAC 60
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 155 ATGGCAGTCCATGATGACTGCAAGCTAAGATTTCTGGAACTGAAGGCGAAAAGGACACAC 214
Query 61 CGTTTCATTGTCTACAAGATCGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGGT 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 215 CGTTTCATTGTCTACAAGATTGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGGT 274
Query 121 GAACCTATTCTAACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGAGGAATGCCGATAC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 275 GAACCTATTCTAACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGACGAATGCCGATAC 334
Query 181 GCCATTTATGATTTCGACTTTGTCACTGCGGAGAATTGCCAGAAGAGCAAGATTTTCTTC 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 335 GCCATTTATGATTTCGACTTTGTCACTGCAGAGAATTGCCAGAAGAGCAAGATTTTCTTC 394
Query 241 ATTGCATGGTGTCCGGACGTAGCAAAGGTGAGAAGCAAGATGATCTATGCGAGCTCCAAG 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 395 ATTGCATGGTGTCCCGACGTAGCAAAGGTGAGAAGCAAGATGATCTATGCGAGCTCTAAG 454
Query 301 GACAGGTTCAAGCGTGAACTTGATGGAATTCAAGTGGAGCTTCAGGCAACCGATCCAACT 360
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 455 GACAGGTTCAAGCGTGAACTTGATGGAATTCAAGTGGAGCTTCAAGCAACTGATCCAACT 514
Query 361 GAGATGGATCTTGATGTTTTGAAAAGCCGCGTCAACTAA 399
|||||||||||||||||||||||||||||||||||||||
Sbjct 515 GAGATGGATCTTGATGTTTTGAAAAGCCGCGTCAACTAA 553
> AT5G59880.1 | Symbols: ADF3 | actin depolymerizing factor 3 |
chr5:24120231-24121894 FORWARD LENGTH=837
Length=837
Score = 403 bits (218), Expect = 6e-112
Identities = 336/393 (85%), Gaps = 8/393 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGTCCATGATGACTGCAAGCTGAGATTTCTGGAACTT-AAGGCGAAAAGGACACA 59
||||| |||||||||||||||||||||| |||| ||||| || ||| |||||||||||||
Sbjct 173 ATGGCAGTCCATGATGACTGCAAGCTGAAATTTATGGAA-TTGAAGACGAAAAGGACACA 231
Query 60 CCGTTTCATTGTCTACAAGATCGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGG 119
||||||||| | |||||||| |||||| |||||| |||||||||||||||||| | ||
Sbjct 232 CCGTTTCATCATTTACAAGATTGAGGAGCTGCAGAAACAAGTGATTGTTGAGAAAATCGG 291
Query 120 TGAACCTATTCTAACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGAGGAATGCCGATA 179
|||||| || ||| | |||||| |||| ||||||||||||||||| |||||||| ||
Sbjct 292 TGAACCGGGTCAAACCCATGAGGACCTTGCTGCAAGTCTTCCAGCTGATGAATGCCGCTA 351
Query 180 CGCCATTTAT-GATTTCGACTTTGTCACTGCGGAGAAT-TGCCAGAAGAGCAAGATTTTC 237
||||||| | ||||| || ||||||| | | ||| | | ||| | ||||| ||||||
Sbjct 352 TGCCATTT-TCGATTTTGATTTTGTCAGTTCTGAGGGTGTCCCA-AGGAGCAGGATTTTT 409
Query 238 TTCATTGCATGGTGTCCGGACGTAGCAAAG-GTGAGAAGCAAGATGATCTATGCGAGCTC 296
||| | ||||||| ||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 410 TTCGTGGCATGGTCTCCGGACACAGC-AAGAGTGAGAAGCAAGATGATCTATGCGAGCTC 468
Query 297 CAAGGACAGGTTCAAGCGTGAACTTGATGGAATTCAAGTGGAGCTTCAGGCAACCGATCC 356
|||||||||||||||| | ||||| || |||||||| || ||||||||||||||||||||
Sbjct 469 CAAGGACAGGTTCAAGAGAGAACTAGACGGAATTCAGGTCGAGCTTCAGGCAACCGATCC 528
Query 357 AACTGAGATGGATCTTGATGTTTTGAAAAGCCG 389
||| |||||||||||||||||||| ||||||||
Sbjct 529 AACCGAGATGGATCTTGATGTTTTCAAAAGCCG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18850405875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5