BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332294
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60380.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1626 0.0
> AT5G60380.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:24285920-24287808 FORWARD LENGTH=1122
Length=1122
Score = 1626 bits (880), Expect = 0.0
Identities = 1023/1093 (94%), Gaps = 5/1093 (0%)
Strand=Plus/Plus
Query 1 ATGACTCTTTTACCTCTTTTGTTCTCAGTAGTTCTAGTTCGTTCTGTTCAAAGTACGGTG 60
|||| |||||| ||||||||||||||||||| ||||||| |||| |||||| ||||||||
Sbjct 31 ATGAATCTTTTGCCTCTTTTGTTCTCAGTAGCTCTAGTTGGTTCGGTTCAATGTACGGTG 90
Query 61 CCCCTTAGATCCTTCAAGGTAAGTGAAAATGTGACATACGATTGCATAGATATTTATAAG 120
|| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 91 CCTCTCAGATCCTTCAAGATAAGTGAAAATGTGACATACGATTGCATAGATATTTATAAA 150
Query 121 CAACCAGGACTTGATCACCCCTTACTCAAAAACCACACAATCCAGATGAAACCATCATTA 180
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 151 CAACCAGGACTTGATCATTCCTTGCTCAAAAACCACACAATCCAGATGAAACCATCATTA 210
Query 181 TCAAGACATGAGCTAAAGAATCAAACAAGCAACAACAAGACATATAAGACGAAAATAAAA 240
|||||||||||||||||||||||||| ||||||||||| |||||||||| | | ||| ||
Sbjct 211 TCAAGACATGAGCTAAAGAATCAAACTAGCAACAACAAAACATATAAGAAGGACATAGAA 270
Query 241 TGTCCATATGGAACTATTCCTGTACTGAGAAATACAAAAGAATTCAACACCAAAGCCCAA 300
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 271 TGTCCATATGGAACTATTCCTGTATTGAGAAACACAAAAGAATTCAACACCAAAGCCCAA 330
Query 301 CTCTTGGCTGCCAAGTATTTCAATCCATTATCAGCTGATAGCCCTGGGACACACATTGCT 360
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||
Sbjct 331 CTCTTGGCTGCCAAGTATTTCAATCCGTTATCAGCTGATAGCCCTGGAACACATATCGCT 390
Query 361 GGGGTAAAGCAACACGGTGGTCCATATCACGGTGTAGAAGCTAAGTTTAATGCATATAAT 420
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 391 GGGGTAAAGCAACACGGTGGTCCATATCATGGTATAGAAGCTAAGTTTAATGCATATAAC 450
Query 421 CTAAACATTAAAGAGGATCAAGCCTCTTATAGTCAAATGTATTTAGGCAGTGGACATTAT 480
||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 451 CTAAACATTGGAGAAGATCAAGCCTCATATAGTCAAATGTATTTAGGCAGTGGACATTAT 510
Query 481 GGCGAAGTCAATTTCATCTCAACGGGGATGATGATAAATCCAGGCATTTTTGGTGACGGA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GGCGAAGTCAATTTCATTTCAACGGGGATGATGATAAATCCAGGCATTTTTGGTGACGGA 570
Query 541 CATCTTTGGACATACGGATTTTGGTTGGGTAAAAGTGGAAAAGGATGTTATAATATGGCA 600
| |||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 571 CGTCTTTGGACATATGGATTTTGGATGGGTAAAGGTGGAAAAGGATGTTATAACATGGCA 630
Query 601 TGCCCAGGGTTTGTTCAAGTATCGAATGTGGTTCCCATAGTCAAACCCCTGTACCTTGAG 660
|| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 631 TGTCCAGGGTTTGTTCAAGTATCGAATGTGGTTCCCTTAGTCAAACCCATGTACCTTAAG 690
Query 661 GGAGGGGA-CTCTGCGTCGTTGCAGTGGGCCATCCATCAAGATGAACAAACAAGAAACTG 719
|||||| | |||| |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 691 CCAGGGGAGC-CTGCATCGTTGCAATGGGCCATCCATCAAGATGAACAAACACGAAACTG 749
Query 720 GTGGGTTATACAAATGTCGCCTTATACATACATCGGTTATTGGCCCAAGGAGCTATTTCA 779
|||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||| |
Sbjct 750 GTGGATTATACAAATGTCGCCTTATACATATATCGGTTATTGGCCAAAAGAGCTATTTTA 809
Query 780 CCTTATGGATAATGGTGCAACTATGGTTGGAGTTGGAGGTGTAGTTCAGGCTTCACATTC 839
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 810 CCTTATGGATAATGGTGCTACTATGGTTGGAGTTGGAGGTGTAGTTCAGGCTTCACCTTC 869
Query 840 TGGTTTAAGCCCTCCAATGGGTAATGGTAAATTTCCGGCAAAAGGTCCATTGAGATCAGC 899
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 870 TGGTTTAAGCCCTCCAATGGGTAATGGTAAATTTCCGGCAAAAGGTCCTTTGAGATCAGC 929
Query 900 CATGTTTTCAAATGTTGATGTCTTGTATTCTAAGTATGAGAAAGGTAAAATCAATGCTTT 959
||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 930 CATGTTTTCCAATGTTGATGTCTTATATTCCAAGTATGAGAAAGGTAAAATAAATGCGTT 989
Query 960 TCCTATAGAGGAGATGCTAGACAGTAG-A--TGTTATGGGCTACGAATTGGTAAGAGAGT 1016
|||||||| |||| ||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 990 TCCTATAGTGGAGTTGCTAGATAGTAGTAGATGTTATGGGCTACGAATTGGTAAGAGAGT 1049
Query 1017 TCGATTTTGGACTAGTCCACTCGGATTCTTTTTCAATTATGGTGGTCCGGGAGGAATCTC 1076
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1050 TCGATTTTGGACTAGTCCACTCGGATACTTTTTCAATTATGGTGGTCCTGGAGGAATCTC 1109
Query 1077 TTGTGGAGTTTGA 1089
|||||||||||||
Sbjct 1110 TTGTGGAGTTTGA 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5