BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332313

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60630.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   259    1e-68


> AT5G60630.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED 
DURING: 6 growth stages; BEST Arabidopsis thaliana protein 
match is: hydroxyproline-rich glycoprotein family protein 
(TAIR:AT3G45230.1); Has 1807 Blast hits to 1807 proteins 
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi 
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 
(source: NCBI BLink). | chr5:24369650-24370404 REVERSE LENGTH=755
Length=755

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 242/287 (84%), Gaps = 24/287 (8%)
 Strand=Plus/Plus

Query  152  CCGAAATGTCTCCATCTCCGACGATGTCTGATGATAACGATTATCCCTCTTCGTCTCAAT  211
            ||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||| 
Sbjct  196  CCGAAATGTCTCCATCTCCGACGATGTCTAATGATTACGATTATCCGTCATCGTCTCAAC  255

Query  212  TTACGGATTCCAGTGATCTCAACTACATTGATAGTACCAGA-----A--C---G--G---  256
            ||||||| |||| |||||||||||||| |||||||||||||     |  |   |  |   
Sbjct  256  TTACGGAATCCAATGATCTCAACTACACTGATAGTACCAGACCGGGAGGCGAAGAAGCAT  315

Query  257  --G-AGGCGGTGAAAATGGC---GGCGGAGGAAAGAAGACCGGAATCG-TG--GTGGGAG  307
              | ||| ||||||||||||   || ||||||||||| |||||||||| ||  || ||| 
Sbjct  316  CCGTAGGTGGTGAAAATGGCGGAGGAGGAGGAAAGAAAACCGGAATCGCTGTTGTTGGAT  375

Query  308  CGATTTCAGCTGCGAGTATGGTTGGATTCGGCGGTTATCTGTTGAAGAAACGGCGAGAGA  367
            ||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct  376  CGATTGCAGCCGCGAGTATGGTTGGATTCGGTGGTTATGTGTTGAAGAAACGGCGAGAGA  435

Query  368  ACATTCGTAGATCGCGGTATGGATACGCCTCCACTGAATTCTTCTGA  414
            |||||||| |||| |||||||| ||||| ||||||||||||||||||
Sbjct  436  ACATTCGTCGATCCCGGTATGGTTACGCTTCCACTGAATTCTTCTGA  482


 Score =  132 bits (71),  Expect = 3e-30
 Identities = 100/113 (88%), Gaps = 6/113 (5%)
 Strand=Plus/Plus

Query  21   TGTGGCTCTTTTAGTTGTGACCGGTGAGATTTCAACTGAAGAAGTTTCACCGGCGATTGA  80
            ||| ||||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct  107  TGTAGCTCTTTTAATGGTGTCCGGTGAGATTTCAACTGAAGAAATTTCACCGGCGATTGA  166

Query  81   GCCTGAGCCATCGTCGTCTCTGCCGCAATCAGAAACCGAAATGCCTCCATCTC  133
            | |  |    ||||||||||||||||||||||||||||||||| |||||||||
Sbjct  167  G-C--A---TTCGTCGTCTCTGCCGCAATCAGAAACCGAAATGTCTCCATCTC  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5