BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332328
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter 2... 2516 0.0
> AT5G60780.1 | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter
2.3 | chr5:24450839-24452756 FORWARD LENGTH=1620
Length=1620
Score = 2516 bits (1362), Expect = 0.0
Identities = 1537/1623 (95%), Gaps = 6/1623 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCACAACCATTCTAATGAAGAAGGCTCCATTGGAACCTCCTTGCATGGAGTTACA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTCACAACCATTCTAATGAAGAAGGCTCCATTGGAACCTCCTTGCATGGAGTTACA 60
Query 61 GCAAGAGAACAAGTCTTCTCTTTCTCCGTCGATGCTTCGTCTCAAACCGTCCAATCCGAC 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 61 GCAAGAGAACAAGTCTTCTCTTTCTCCGTCGATGCTTCGTCTCAAACAGTCCAATCAGAC 120
Query 121 GACCCAACGGCTAAATTCGCCCTTCCCGTTGATTCTGAACATCGTGCCAAAGTGTTCAAC 180
|| ||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 121 GATCCAACAGCTAAATTCGCCCTTCCGGTTGATTCCGAACATCGAGCCAAAGTGTTCAAC 180
Query 181 CCACTCTCATTTGCAAAACCTCACATGAGAGCATTTCACTTAGGATGGCTCTCTTTCTTC 240
|||||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 181 CCACTCTCTTTTGCTAAACCTCACATGAGAGCCTTCCACTTAGGATGGCTCTCATTCTTC 240
Query 241 ACTTGCTTCATCTCAACCTTCGCGGCCGCACCATTAGTCCCCATCATCCGCGACAACCTC 300
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ACATGCTTCATCTCCACCTTCGCGGCAGCACCATTAGTCCCCATCATCCGCGACAACCTC 300
Query 301 GACCTCACCAAAACCGACATTGGGAATGCCGGAGTCGCCTCCGTCTCTGGCGCCATTTTC 360
|||||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||
Sbjct 301 GACCTCACTAAAACCGACATTGGAAACGCCGGAGTCGCATCCGTCTCTGGTGCCATTTTC 360
Query 361 TCACGGTTAGCCATGGGAGCGGTTTGCGATCTCCTTGGTGCGCGTTTTGGGACTGCCTTC 420
||| |||||||||||||||||||||| |||||||| ||||| || | |||||||||||||
Sbjct 361 TCAAGGTTAGCCATGGGAGCGGTTTGTGATCTCCTCGGTGCACGATATGGGACTGCCTTC 420
Query 421 TCCCTCATGCTAACAGCCCCAATCGTCTTCTCAATGTCATTTGTGGGTGGCCCCAGCGGA 480
|||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 421 TCCCTCATGCTAACCGCCCCAACCGTCTTCTCAATGTCGTTTGTGGGTGGCCCTAGCGGA 480
Query 481 TACTTAGGCGTCCGGTTCATGATCGGATTCTGCCTCGCCACGTTTGTGTCGTGCCAGTAT 540
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 481 TACTTAGGCGTCCGGTTCATGATCGGATTCTGTCTCGCCACGTTTGTATCATGCCAGTAT 540
Query 541 TGGACCAGCGTCATGTTCAACGGTAAGATCATAGGACTAGTGAATGGCTGTGCCGGCGGG 600
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 541 TGGACCAGCGTTATGTTCAACGGTAAGATCATAGGACTAGTGAACGGCTGTGCAGGCGGG 600
Query 601 TGGGGTGATATGGGCGGTGGAGTGACTCAACTCCTCATGCCGATGGTCTTCCACGTCATT 660
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TGGGGTGATATGGGCGGTGGAGTGACTCAACTCCTAATGCCGATGGTCTTCCACGTCATC 660
Query 661 AAACTCGCCGGAGCCACTCCGTTCATGGCGTGGCGCATAGCTTTTTTCGTTCCCGGATTT 720
||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 661 AAACTTGCCGGAGCCACTCCGTTCATGGCCTGGCGGATAGCTTTCTTCGTTCCCGGATTT 720
Query 721 CTTCAAGTTGTTATGGGCATTCTCGTCCTCAGTCTCGGCCAAGATCTCCCTGACGGTAAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTTCAAGTTGTTATGGGCATTCTCGTCCTCAGTCTCGGCCAAGATCTCCCTGACGGTAAC 780
Query 781 CTAAGTATACTTCAGAAGAGAGGTCAAGTCTCTAAAGACAAATTCTCCAAGGTTTTCTGG 840
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTAAGTACCCTTCAGAAGAGTGGTCAAGTCTCTAAAGACAAATTCTCCAAGGTTTTCTGG 840
Query 841 TTTGCTGTGAAGAACTACAGAACATGGATTTTATTCGTTCTTTATGGATCTTCCATGGGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTTGCTGTGAAGAACTACAGAACATGGATTTTATTCGTTCTTTATGGATCTTCCATGGGA 900
Query 901 ATTGAATTAACTATCAACAACGTTATCTCCGGATATTTCTACGACAGGTTTAACCTTAAG 960
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 ATTGAATTAACTATCAACAACGTTATCTCCGGATATTTTTACGACAGGTTTAACCTTAAG 960
Query 961 CTTCAAACAGCTGGTATCGTAGCAGCCAGCTTTGGAATGGCTAACTTCATTGCCCGTCCC 1020
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 CTTCAAACAGCTGGTATAGTAGCAGCCAGCTTTGGAATGGCTAACTTCATCGCCCGTCCC 1020
Query 1021 TTCGGTGGTTACGCTTCTGATGTAGCGGCTCGGATTTTTGGAATGAGAGGCCGGTTATGG 1080
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1021 TTCGGTGGTTACGCTTCTGATGTAGCGGCTCGGGTTTTTGGCATGAGAGGCCGGTTATGG 1080
Query 1081 ACCTTATGGATCTTTCAAACCGTAGGAGCTCTTTTCTGTATCTGGCTAGGTCGAGCTAGT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACCTTATGGATCTTTCAAACCGTAGGAGCTCTTTTCTGTATCTGGCTAGGTCGAGCTAGT 1140
Query 1141 ACACTTCCCATAGCAATCTTAGCAATGATGCTCTTCTCAGTCGGGACACAAGCAGCTTGT 1200
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 1141 TCACTTCCCATAGCAATCCTAGCAATGATGCTCTTCTCAATCGGTACACAAGCAGCTTGC 1200
Query 1201 GGAGCCCTCTTCGGGGTTGCGCCTTTTGTCTCGCGCCGCTCTCTAGGGCTCATATCGGGA 1260
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGAGCCCTCTTCGGAGTTGCACCTTTTGTCTCGCGCCGCTCTCTAGGGCTCATATCGGGA 1260
Query 1261 CTAACCGGCGCAGGAGGAAACTTTGGGTCCGGTTTGACTCAACTGCTTTTCTTCTCATCA 1320
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTAACCGGCGCAGGAGGAAACTTCGGGTCCGGTTTGACTCAACTGCTTTTCTTCTCATCA 1320
Query 1321 TCGAGGTTTAGTACAGCGGAAGGG-CTCTCGTTGATGGGCGTTATGGCAGTTTTGTGCAC 1379
|||||||||||||||| || ||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1321 GCGAGGTTTAGTACAGCTGA-GGGACTCTCATTGATGGGCGTTATGGCGGTTTTGTGCAC 1379
Query 1380 GA-TCCCGGTTGCGTTTATACATTTTCCGCAATGGGGAAGCATGTTTTTAAGACCGTCGA 1438
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 -ACTCCCAGTTGCGTTTATACATTTTCCGCAATGGGGAAGCATGTTTTTAAGACCGTCGA 1438
Query 1439 GCC-ATGGAGAAAGATCGCAGGAAGAATATTATTACAGTTCCGAGTGGACTGAGAACGAG 1497
|| ||||||||||||| ||||| |||||||||||| |||| |||||||| ||||| |||
Sbjct 1439 -CCGATGGAGAAAGATCACAGGAGGAATATTATTACGGTTCTGAGTGGACGGAGAATGAG 1497
Query 1498 AAACAACAAGGATTGCACGAAGGAAGCATCAAATTTGCTGAGAATAGTCGGCCAGAAAGA 1557
|||||||||||||||||||||||||||||||||||||| ||||||||| || |||| |||
Sbjct 1498 AAACAACAAGGATTGCACGAAGGAAGCATCAAATTTGCAGAGAATAGTAGGTCAGAGAGA 1557
Query 1558 GGCCGAAAAGTAGCTTTGACTGATATTCCAACGCCGGCGAACGCAACTCCAAGTCATGTT 1617
||||| |||||||||||| || | ||||||||||||| ||||| ||||||||||||||||
Sbjct 1558 GGCCGGAAAGTAGCTTTGGCTAACATTCCAACGCCGGAGAACGGAACTCCAAGTCATGTT 1617
Query 1618 TGA 1620
|||
Sbjct 1618 TGA 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5