BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332329
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60790.1 | Symbols: ATGCN1, GCN1 | ABC transporter family pr... 2767 0.0
> AT5G60790.1 | Symbols: ATGCN1, GCN1 | ABC transporter family
protein | chr5:24453258-24455970 REVERSE LENGTH=2387
Length=2387
Score = 2767 bits (1498), Expect = 0.0
Identities = 1694/1790 (95%), Gaps = 7/1790 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTCTGACGCTAGCAAGAAGAAGGCAGCTCAAAAGAAAGCTGCTGCCGCCGCCAAA 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 98 ATGGTGTCTGACGCTAGCAAGAAGAAGGCAGCTCAGAAGAAAGCTGCTGCCGCCGCTAAA 157
Query 61 AGAGGTGGTAAAGCTGCTGCTTCTTCTAAATCCGCCGCTACTTCCTCCAATGGAGTTGAT 120
||||||||||||||||||||| | || ||||||||||||||||| ||||| || ||||||
Sbjct 158 AGAGGTGGTAAAGCTGCTGCTCCATCCAAATCCGCCGCTACTTCTTCCAACGGTGTTGAT 217
Query 121 AGCTTATCGAGCGGAGTCGACGCTCTTCAAATTTCTGATCGGACTTGTACCGGAGTTCTC 180
||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 218 AGCTTGTCAAGCGGTGTCGATGCTCTTCAAATTTCTGATCGGACTTGTACCGGAGTTCTC 277
Query 181 TGTTCTCATCCCCAATCTAGGGATATTCGAATAGAATCTCTGTCTGTTACGTTTCATGGT 240
||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 278 TGTTCTCATCCTCAATCTAGAGATATCCGAATAGAATCTCTGTCTGTGACGTTTCATGGT 337
Query 241 TATGACCTTATTGTTGATTCAATGTTGGAGCTTAACTATGGAAGGCGTTATGGTCTCCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TATGACCTTATTGTTGATTCAATGTTGGAGCTTAACTATGGAAGGCGTTATGGTCTCCTT 397
Query 301 GGGTTGAATGGTTGTGGAAAGTCCACTCTTTTAACTGCAATCGGACGCAGAGAGATACCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GGGTTGAATGGTTGTGGAAAGTCCACTCTTTTAACTGCAATCGGACGCAGAGAGATACCG 457
Query 361 ATTCCGGATCACATGGATATCTATCATCTT-TCTCATGAGATTGAAGCTACTGACATGTC 419
||||||||||| ||||||||||| ||| || ||||| |||||||||||||||||||||||
Sbjct 458 ATTCCGGATCAAATGGATATCTACCAT-TTGTCTCACGAGATTGAAGCTACTGACATGTC 516
Query 420 TTCCCTTGAGGCTGTTGTTAGCTGTGATGAGGAGAGGTTGAGGTTGGAGAAGGAAATTGA 479
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 517 TTCCCTGGAGGCTGTTGTTAGCTGTGATGAGGAGAGGTTGAGGTTAGAGAAAGAAGTTGA 576
Query 480 AATTCTTGTTGAGCAGGATTCTGGTAG-CG-AG--CGTCTTCAATCTATCTATGAGAGGT 535
||||||||| |||||||| ||| || || || |||||||||||||||||||||||||
Sbjct 577 AATTCTTGTACAGCAGGATGATGG-AGGCGGAGAGCGTCTTCAATCTATCTATGAGAGGT 635
Query 536 TAGATGCCATGGATGCTGCAACCGCTGAGAAGCGTGCTGCTGAAATTCTGTTTGGACTTG 595
|||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 636 TAGACGCCATGGATGCAGAAACCGCTGAGAAACGTGCTGCTGAAATTCTGTTTGGACTTG 695
Query 596 GTTTCGACAAGGAAATGCAAGCTAAGAAGACGAAAGATTTTTCCGGTGGTTGGAGGATGA 655
||||||||||||||||||| || |||||||| |||||||| || ||||||||||||||||
Sbjct 696 GTTTCGACAAGGAAATGCAGGCGAAGAAGACAAAAGATTTCTCTGGTGGTTGGAGGATGA 755
Query 656 GAATTGCATTAGCAAGAGCTCTCTTCATAATGCCAACTATCCTTTTGCTTGATGAGCCGA 715
|||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 756 GAATTGCATTGGCAAGAGCACTCTTCATTATGCCGACAATCCTTTTGCTTGATGAGCCGA 815
Query 716 CAAATCATTTAGATTTGGAAGCTTGTGTGTGGTTAGAAGAGAGCCTGAAGAATTTTGATC 775
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 816 CTAATCATTTAGATTTGGAAGCTTGTGTGTGGCTAGAAGAGAGCCTGAAGAATTTTGATC 875
Query 776 GCATCCTTGTTGTGGTATCACACTCGCAGGATTTCTTGAATGGAGTTTGTACAAACATCA 835
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 876 GCATCCTTGTTGTGGTATCCCACTCACAGGATTTCTTGAATGGAGTGTGTACAAACATCA 935
Query 836 TCCACATGCAGAGCAAGCAGCTCAAGTACTACACTGGTAACTTTGATCAGTATTGCCAGA 895
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 TCCACATGCAGAGCAAACAGCTCAAGTACTACACTGGTAACTTTGATCAGTATTGCCAGA 995
Query 896 CTCGTTCTGAGCTAGAAGAGAATCAGATGAAACAATACAGATGGGAGCAGGAGCAGATTT 955
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 996 CTCGTTCTGAACTTGAAGAGAACCAGATGAAACAATACAGATGGGAGCAGGAGCAGATTT 1055
Query 956 CTCACATGAAGGAGTACATTGCTAGGTTTGGTCACGGTTCAGCCAAACTTGCTCGTCAAG 1015
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1056 CTCACATGAAGGAGTACATTGCTCGGTTTGGTCACGGTTCAGCCAAACTTGCTCGTCAAG 1115
Query 1016 CACAGAGTAAAGAGAAAACATTGGCAAAGATGGAGAGAGGTGGGCTCACTGAAAAGGTTG 1075
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CACAGAGTAAGGAGAAAACATTGGCAAAGATGGAGAGAGGTGGGCTCACTGAAAAGGTTG 1175
Query 1076 CCAGAGACAGCGTTCTCGTTTTCCGTTTTGCTGATGTTGGGAAGCTTCCACCGCCAGTGC 1135
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CTAGAGACAGTGTTCTCGTTTTCCGTTTTGCTGATGTTGGGAAGCTTCCACCGCCAGTGC 1235
Query 1136 TTCAGTTTGTGGAAGTGTCTTTTGGGTACACACCGGACTATCTCATTTACAAGAACATCG 1195
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 1236 TTCAGTTTGTTGAAGTGTCTTTTGGTTACACACCGGACTATCTTATTTACAAGAACATTG 1295
Query 1196 ACTTTGGTGTCGACTTGGACTCTAGGGTCGCTCTCGTGGGACCTAATGGAGCTGGAAAGA 1255
|||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||
Sbjct 1296 ACTTTGGTGTCGACTTGGACTCGAGGGTTGCCCTTGTGGGACCTAATGGAGCTGGAAAGA 1355
Query 1256 GTACACTTTTGAAGCTCATGACTGGTGAACTGCACCCAACTGAAGGAATGGTGCGACGTC 1315
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1356 GTACACTTTTGAAGCTCATGACTGGTGAATTGCACCCAACTGAAGGAATGGTGCGACGTC 1415
Query 1316 ACAACCACTTGAAGATTGCTCAGTACCATCAGCATCTGGCTGAGAAGCTAGACCTGGAAT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1416 ACAACCACTTGAAGATTGCTCAGTACCATCAGCATCTGGCTGAGAAGCTAGACTTGGAAT 1475
Query 1376 TGCCTGCACTTCTCTACATGATGAGGGAGTTCCCGGGTACCGAAGAGGAGAAAATGAGAG 1435
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1476 TGCCTGCACTTCTCTACATGATGAGGGAGTTCCCGGGTACTGAAGAGGAGAAAATGAGAG 1535
Query 1436 CTGCGATTGGTAGATTTGGTCTTACTGGTAAGGCCCAAGTAATGCCTATGAAAAATCTAT 1495
||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||||
Sbjct 1536 CTGCGATTGGTAGGTTTGGTCTAACTGGTAAGGCTCAAGTGATGCCAATGAAGAATCTAT 1595
Query 1496 CTGATGGACAAAGGAGCAGAGTCATCTTTGCGTGGTTAGCTTATAAGCAGCCTAACATGC 1555
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1596 CTGACGGACAAAGGAGCAGAGTGATCTTTGCGTGGTTAGCTTATAAGCAGCCTAACATGC 1655
Query 1556 TTCTACTGGACGAGCCAACTAACCATTTGGATATCGAGACAATTGACTCACTCGCTGAGG 1615
|||| || || ||||| |||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1656 TTCTTCTTGATGAGCCTACTAACCATTTGGATATCGAGACAATCGACTCGCTTGCTGAGG 1715
Query 1616 CATTGAACGAGTGGGATGGTGGTCTGGTTCTGGTGAGTCACGACTTCAGGCTGATCAACC 1675
||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1716 CATTGAATGAGTGGGATGGTGGTTTGGTTCTGGTTAGTCACGACTTCAGGTTGATCAACC 1775
Query 1676 AAGTGGCTCATGAGATATGGGTTTGTGAGAAACAATGCATTACGAAATGGAACGGTGACA 1735
||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 1776 AAGTGGCTCATGAGATATGGGTTTGCGAGAAACAATGCATCACTAAATGGAATGGTGACA 1835
Query 1736 TTATGGACTTCAAGAGGCACCTCAAGGCTAAAGCCGGACTTGAAGATTGA 1785
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1836 TTATGGACTTCAAGAGGCACCTTAAGGCTAAAGCCGGACTTGAAGATTGA 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88302758655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5