BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332331

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60805.1 | Symbols:  | Putative membrane lipoprotein | chr5:...   335    2e-91


> AT5G60805.1 | Symbols:  | Putative membrane lipoprotein | chr5:24465060-24465487 
REVERSE LENGTH=321
Length=321

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 288/336 (86%), Gaps = 21/336 (6%)
 Strand=Plus/Plus

Query  1    ATGAAGACACTTTTCTCGTTTTTCACTCTTCTTATTCTTATTTCACCATGTGTATCAAAT  60
            ||||||||||||| || ||||||||||||| | |||||||| ||| ||||||||||||||
Sbjct  1    ATGAAGACACTTTCCTTGTTTTTCACTCTTGTAATTCTTATCTCATCATGTGTATCAAAT  60

Query  61   CTTATGGCAAAACATGATTCAGAGAGAAAAACTCCCTTTTCTAATCACGGAGA-AAGCCA  119
            |||||||||||||||||||||||||||||| |||||||||||||||||||| |  || | 
Sbjct  61   CTTATGGCAAAACATGATTCAGAGAGAAAAGCTCCCTTTTCTAATCACGGA-ATGAGGCT  119

Query  120  TCAAAAT-CAGCCATATGTGCATTTTCGAAGTCGAAGAC-ACAGAAATTATTTTATTCCT  177
            |||| || || |||||| |||||||||  |    ||| | |||||  | |||||||||||
Sbjct  120  TCAACATCCA-CCATATTTGCATTTTC--A----AAG-CTACAGAGGTCATTTTATTCCT  171

Query  178  GAGGAATGTA-CTATGTTATGTCCAGAGCGTTGTTTAAGAAAACATAGATTAATGGTATT  236
            |||||||||| | | |||||||||| ||||||||||||||| |||||| ||||||||| |
Sbjct  172  GAGGAATGTACCGA-GTTATGTCCACAGCGTTGTTTAAGAAGACATAGGTTAATGGTA-T  229

Query  237  CTGTAGTATTCCACAACATATTTGTCGTTGTAGTTCTTTTCAAATAAGGTCCCCTCACAT  296
            || | |||||||||||||| ||||||||||||| || || ||| ||||  ||||||||||
Sbjct  230  CT-T-GTATTCCACAACATTTTTGTCGTTGTAGCTCCTTCCAATTAAGCCCCCCTCACAT  287

Query  297  TGCAACTTCTCCTAAACAATCATT--AAATAAATAA  330
            |||||||||||||||||| | |||  ||| ||||||
Sbjct  288  TGCAACTTCTCCTAAACAGT-ATTCTAAA-AAATAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5