BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332347
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60980.2 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 2235 0.0
> AT5G60980.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:24543360-24546269 FORWARD LENGTH=1745
Length=1745
Score = 2235 bits (1210), Expect = 0.0
Identities = 1328/1385 (96%), Gaps = 7/1385 (1%)
Strand=Plus/Plus
Query 1 ATGGCACAGCAGGAAGCTAGTCCTTCCCCTGGTGCTGAGGTTGTTGGTCGTGCCTTTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGCACAGCAGGAAGCTAGTCCTTCCCCTGGTGCTGAGGTTGTTGGTCGTGCCTTTGTG 180
Query 61 GAGCAATACTATCATATTCTTCACCAATCTCCCGGTTTAGTTCACCGGTTTTATCAAGAT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GAGCAATACTATCATATTCTTCACCAATCTCCCGGTTTAGTTCATCGGTTTTATCAAGAT 240
Query 121 TCGAGCTTGTTAACCCGACCTGATGTTACCGGTGCTGTGACTACTGTCACAACTATGCAA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGAGCTTTTTAACCCGACCTGATGTTACCGGTGCTGTGACTACTGTCACAACTATGCAA 300
Query 181 GCGATCAACGATAAGATTCTGTCGTTGAAATATGAAGACTACACAGCTGAGATAGAAACT 240
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GCGATCAACGACAAGATTCTGTCGTTGAAATATGAAGACTACACGGCTGAGATAGAAACT 360
Query 241 GCGGATGCTCAGGAGTCTCATGAGAGAGGTGCTATTGTGCTGGTTACAGGACATTTAACC 300
|| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 361 GCTGATGCTCAGGAGTCTCATGAGAGAGGTGTTATTGTGCTGGTTACAGGACGCTTAACC 420
Query 301 GGGAACGATAATGTGAGGAAGAAGTTCAGTCAAACTTTTTTCTTGGCTCCACAAGACAAG 360
|||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 421 GGGAACGATAATGTTAGGAAGAAGTTTAGTCAATCTTTTTTCTTGGCTCCACAAGACAAA 480
Query 361 GGATACTTTGTCTTGAACGACGTGTTTCGATTCCTCGAGGAGAAAGAGGTGACGGCACAA 420
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 481 GGATACTTTGTCTTAAACGACGTGTTTCGATTCCTTGAGGAGAAAGAGGTGACTGCACAA 540
Query 421 GCCCGCTCTGTCCCCATCAATGGAAACC-CCAGGGATGTTCAGGCTCCCCTGGAACCAGA 479
||||||||||||||||||||||| |||| | ||||||||||||||||| | ||||||||
Sbjct 541 GCCCGCTCTGTCCCCATCAATGG-AACCACTAGGGATGTTCAGGCTCCTATTGAACCAGA 599
Query 480 ACGTGTTATTGTTACTAACGAGCTCGAGGTAGAACCCGAGCCAGTTGCTTCTATCGAGGA 539
||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 ACGTGTTGTTGTTAGTCACGAGCCCGAGGTAGAACCCGAGCCAGTTGCTTCTATCGAGGA 659
Query 540 AGAAGATCTTGACAATGTGGCGGAAGTGTATGATCCTTCTGATAAAGATGAAGGAGTTGT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAAGATCTTGACAATGTGGCGGAAGTGTATGATCCTTCTGATAAAGATGAAGGAGTTGT 719
Query 600 TGTTGACGTTGAGCCTATCGAACCTGCTACTCAAATAAGTCATAATGAAATCTTATCAGT 659
|||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 720 TGTTGACGTTGAGCCTATTGAACCTCCCACTCAAATAAGTCATAATGAAATCTTATCAGT 779
Query 660 GTCTCAAGGAGATGCTCCTAAGCATTCTTATGCTTCAATCCTCAAGCAGATGAAAAGCAG 719
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCCTCAAGGAGATGCTCCTAAGCATTCTTATGCTTCAATCCTCAAGCAGATGAAAAGCAG 839
Query 720 TCCAGCACCAAC-ACACA--TTGCTCGGAACAAGCCAAGACCAGCTCCAGTCAACCATAA 776
|||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||| ||
Sbjct 840 TCCAGCACCAACAACACACGTTGCTAGAAACAAGCCAAGACCAGCTCCAGTCAACCAGAA 899
Query 777 GCCAACCGCTCCTCCTGCTAAGCCTGCAGCAGGACCTGAGGCGTCAGCTCATGAGAATGT 836
|| ||||| ||||||||| ||||||||||| |||| ||||| |||||||||||||||||
Sbjct 900 GCTGACCGCGCCTCCTGCTGAGCCTGCAGCAAGACCCGAGGCTTCAGCTCATGAGAATGT 959
Query 837 TCCAAATAGTAGCCATGTTGATGTGGAAGATGATGGTCATTCGATTTATGTTCGAAATTT 896
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCCGAATAGTAGCCATGTTGATGTGGAAGATGATGGTCATTCGATTTATGTTCGAAATTT 1019
Query 897 GCCGTTTGACTCCACACCAACACAACTTGAAGAGGTGTTCAAGAACTTTGGTGCAATCAA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCCGTTTGACTCCACACCAACACAACTTGAAGAGGTGTTCAAGAACTTTGGTGCAATCAA 1079
Query 957 GCATGAGGGGATTCAAGTCAGAAGCAATAAGCAGCAAGGTTTCTGTTTTGGTTTTGTGGA 1016
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 GCATGAGGGGATTCAAGTCAGAAGCAACAAGCAGCAAGGTTTCTGTTTTGGTTTTGTGGA 1139
Query 1017 ATTTGAAACATCTAGCGGAAAGCAGAGTGCGCTTGAGGCCTCACCAGTTACAATTGGAGA 1076
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1140 ATTTGAAACATCTAGCGGAAAGCAAAGTGCCCTCGAGGCCTCACCAGTTACAATTGGAGA 1199
Query 1077 TCGTCAAGCTGTTGTAGAGGAGAAGAAAACAAATAGTCGAGGAGGCGGCAACAATGGAGG 1136
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1200 TCGTCAAGCTGTTGTAGAGGAGAAGAAAACAAATAGTCGAGGAGGAGGCAACAATGGAGG 1259
Query 1137 TAGTAGGGGAAGGTACTTTTCCGGAAGAGGAAGTTTCCGAAATGAAAGTTTCAAAGGAGG 1196
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 TAGCAGGGGAAGGTACTTTTCCGGAAGAGGAAGTTTCCGAAATGAAAGCTTCAAAGGAGG 1319
Query 1197 ACGCGGTAGTGGAGGAAGAGGAGGCTATGGAAGAGGAGGAGGTGAGTTTTCTGGTAGACC 1256
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACGCGGTGGTGGGGGAAGAGGAGGCTATGGAAGAGGAGGAGGTGAGTTTTCTGGTAGACC 1379
Query 1257 AAAGAGCTCAAACCCACGAAATGGAGGAGAAGGTTACCAAAGAGTTCCTCAAAACGGAGG 1316
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 AAAGAGCTCAAACCCACGAAATGGAGGAGAAGGTTACCAAAGGGTTCCTCAAAACGGAGG 1439
Query 1317 AGGTGGAAGAGGAGGCCGAGGAGAAGGAGGTCGTGGTGG-GTCTCGCGGTGGTGGTTCAT 1375
|||||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||
Sbjct 1440 AGGTGGAAGAGGAGGCCGCGGAGAAGGAGGTCGTGGTGGAG-CTCGAGGTGGTGGTTCAT 1498
Query 1376 CTTGA 1380
|||||
Sbjct 1499 CTTGA 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5