BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332363
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61200.3 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1415 0.0
> AT5G61200.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; BEST Arabidopsis thaliana protein match is: myosin
heavy chain-related (TAIR:AT5G07890.3). | chr5:24620216-24622666
FORWARD LENGTH=1896
Length=1896
Score = 1415 bits (766), Expect = 0.0
Identities = 885/942 (94%), Gaps = 9/942 (1%)
Strand=Plus/Plus
Query 124 AGGTTGGAACTGAATGCGAATTCGTTGTCAGAGTCTTGTTTAGAAGATAAGAGAAGAATT 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 319 AGGTTGGAACTGAATGCGAATTCGTTGTCAGAGTCTCGTTTAGAAGATAAGAGAAGAATT 378
Query 184 CAGATATTGGAGAAGGAACTGTTGAATTGCTACCAAGAGATTGATTATTTGCGGGATCAA 243
||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 379 CAGATGTTGGAGAAAGAATTGTTGAATTGCTACCAGGAGATTGATTATTTGCGGGATCAA 438
Query 244 GTAAGTTTCAGAGGCCAGGAAATGAACGACCTGAGTGAACATGTGCTTGATCTTGAAGTC 303
|||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 439 GTAAACTTCAGAAGCCAGGAAATGAACGACCTGAGTGAACATGTACTCGATCTTGAAGTC 498
Query 304 AAAGTAACTGAATCAGGGAGATTGGAAGAAGAAGTTAACTATTTGAGGGAGGAGTTGTGT 363
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AGAGTAACTAAATCAGGGAAATTGGAAGAAGAAGTTAACTATTTGAGGGAGGAGTTGTGT 558
Query 364 ACGTCGAAATCTGAGCAACTATTGTTGTTGCAAGAACTGGAGAGCGCAGAAACTGAGCTA 423
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 559 TCGTCGAAATCTGAGCAGCTATTGTTGTTGCAAGAACTGGAGAGCACAGAAACTGAGCTA 618
Query 424 CAGTTGTCTTTGTTTTCTGTTGAGAAGCTGGAGGAGTCTTTCTCATCCTTAACATTGGAG 483
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 619 CAGTTTTCTTTGTTTTCTGTTGAGAAGCTGGAGGAGTCGGTCTCATCCTTAACATTGGAG 678
Query 484 TCTCAGTGCGAGATAGAAAGCATGAAACTCGATATAGCAGCGTTGGAGGAGACGCTCTTT 543
|||||||| |||||||||||||| ||||| ||||||| |||||||||| || ||||||||
Sbjct 679 TCTCAGTGTGAGATAGAAAGCATAAAACTTGATATAGTAGCGTTGGAGCAGGCGCTCTTT 738
Query 544 GATGCTCAGAAATTTCAAGGAGAAAGCATCCaaaaaaaCGATAAGTTAAGAGAAGTAGTC 603
|||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||
Sbjct 739 GATGCTCAGAAATTTCAAGGTGAAAGCATCCAAGAAAACGATAAGTTAAGAGAAATAGTC 798
Query 604 AAGGAGCTACGGTTGAAGTCTCAAGAGGCAGAAGAGAATGCTGAGTGCTTAGAGAAGCAA 663
||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||
Sbjct 799 AAGGAGCTACGGTTGAACTCTCGAGAGGCAGAAGAGAATGCTGAGTGTTTAGAGAAGCAA 858
Query 664 AACAAAAAGCTGATGGAGAGATGGGTAGACTCTGAAAGGAATATCAAAGAATTATGTCAA 723
||||| |||||||||||||||| |||| ||||||||||||||||||||| ||| |||||
Sbjct 859 AACAAGGAGCTGATGGAGAGATGTGTAGCCTCTGAAAGGAATATCAAAGACTTACGTCAA 918
Query 724 AGCTTTAGA-GAACGGTTGGAAAGTGAAGGTGAAGCAG-CTGTAAATGCAGAGGAATGTT 781
||||||||| ||| |||||||||||||| ||||||| | |||||||| | | || ||||
Sbjct 919 AGCTTTAGAGGAA-GGTTGGAAAGTGAAAGTGAAGC-GCCTGTAAAT-C-CA-GATTGTT 973
Query 782 TCCATGAGATCATCAAGAAATTAGAGG-TTTCCCGAGATGCGAAACTGAGAGACAAAATG 840
||||||| ||||||||||||||||||| ||||| | |||| |||||||||||||||||||
Sbjct 974 TCCATGACATCATCAAGAAATTAGAGGTTTTCCAG-GATGGGAAACTGAGAGACAAAATG 1032
Query 841 GAAGATATGGCAAGACAGATACTTCAATACAAAGATCTTGTAAAGCAGCTCAAGGATGAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GAAGATATGGCAAGACAGATACTTCAATACAAAGATCTTGTAAAGCAGCTCAAGGATGAG 1092
Query 901 TTGAAAGAAGAGAAACTAAAGGCCAAGGAAGAAGCAGAGGACTTAACACAAGAGATGGCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1093 TTGAAAGAAGAGAAACTAAAGGCCAAGGAAGAAGCAGAGGACTTAACACAAGAAATGGCT 1152
Query 961 GAACTAAGATATAAAATGACATGTTTATTGGAGGAAGAATGCAAGCGGCGTGCATGCATC 1020
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GAATTAAGATATGAAATGACATGTTTATTGGAGGAAGAATGCAAGCGGCGTGCATGCATC 1212
Query 1021 GAACAAGCATCATTACAGAGAATAGCCAATCTAGAGGCACAG 1062
||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1213 GAACAAGCATCATTACAAAGAATAGCCAATCTAGAAGCACAG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5