BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332371
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61280.1 | Symbols: | Remorin family protein | chr5:2464362... 1110 0.0
> AT5G61280.1 | Symbols: | Remorin family protein | chr5:24643625-24644910
REVERSE LENGTH=792
Length=792
Score = 1110 bits (601), Expect = 0.0
Identities = 731/794 (92%), Gaps = 8/794 (1%)
Strand=Plus/Plus
Query 1 ATGGATAACTTGGTTAAGCAAAGAAGAAGAAGGGTCTCAATTTCCGAGAACA-AACAAGC 59
|||||||| |||||||||||||||||||||||||||||||| || ||||||| || || |
Sbjct 1 ATGGATAATTTGGTTAAGCAAAGAAGAAGAAGGGTCTCAATCTCTGAGAACATAA-AAAC 59
Query 60 GGATTTGTCAAGGCTATCAGAATTAGATATAACCGATTACCCAGCATTAAACTGGCTGAA 119
||||||| ||| |||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 60 GGATTTGCCAATGCTATCAGAATTGGACATAACAGATTACCCAGCATTAAACTGGCTGAA 119
Query 120 AAACCAATCATATTGGTACGAGAAAAATGACTACTACAACGAGAAAGAGAGCGAATTCGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 120 AAACCAATCATATTGGTACGAGAAAAATGACTACTACAACGAGAAAGAGAGTGAATTGGC 179
Query 180 AGTTTCTATTGCGGCTGCTGCATTCGTCATTAGATCAATGGAAGAAGCCGATAAACGAAA 239
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 AGTTTCTGTTGCGGTTGCTGCATTCGTCATTAGATCAATGGAAGAAGCCGATAAACAAAA 239
Query 240 AGCAAAAAGAATAAGAGAAGAAATCAAGAGGTCACGGACGAAGAAAA-CCAATCCGGTTA 298
| | |||||||||||||||||||||||||||||| |||| || |||| |||||| |||||
Sbjct 240 ATCGAAAAGAATAAGAGAAGAAATCAAGAGGTCAAGGACCAA-AAAATCCAATCTGGTTA 298
Query 299 CACCTGATGCCGAAGTAAAGAGGTTAAGCAAATCATATACACAAGAGGTGAATATTGGAA 358
|||| || || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 TACCTAATACCCAAGTAAAGAGGTTAAGCAAATCATATACACAAGAGGTGAAAATTGGAG 358
Query 359 AGGAAAGTTTCAGGAAAAAGCTGTTGGAGTATCCATCAGAAAACCGTCGGCCACAAGAGA 418
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGGAGAGTTTCAGAAAAAAATTGTTGGAGTATCCATCAGAAAACCGTCGGCCACAAGAGA 418
Query 419 TTGGCTCATCCTCTAGGA-CATCCGGACTTGCTTCAGCGTCAAGTAAAGCAGATTCTTGG 477
||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGGCTCATCCTCC-GGAACATCAGGACTTGCTTCAGCGTCAAGTAAAGCAGATTCTTGG 477
Query 478 GAAAATTCTCACATTAAGAAAATAAGATTAAGGTATGAGAAAATGAAAGCTGATATCGTG 537
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 GAAAAATCTCAAATCAAGAAAATAAGATTAAGGTATGAGAAAATGAAAGCTGATATTGTG 537
Query 538 GGTTGGGAAAATGAGAGAAAATTAGCAGCTACACTGAGAATGGAGaaaaaaaaGAGTGAA 597
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 538 GGTTGGGAGAATGAGAGAAAATTAGCAGCTACACTGTTAATGGAGAAAAGAAAGAGTGAA 597
Query 598 ATGGAGAAAAGAAGAGAAATAAATAATCAGCATTACAAGTCAAAATTAGCAAGGATTAAA 657
||||||| |||| || || |||||||||||||| ||||||||||||||||||||| ||
Sbjct 598 TTGGAGAAGAGAAAAGGGATTAATAATCAGCATTATAAGTCAAAATTAGCAAGGATTCAA 657
Query 658 CTAATTGCTGATGGAGCCAAGAAACAGCTTGAGGAGAAGAGGAGGAGCAAAGAAGCTCAA 717
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 CTAATAGCTGATGGAGCCAAGAAACAGCTTGAGGAGAAGAGAAGGAGCAAAGAAGCTCAA 717
Query 718 GTTCATGAAAAAGTAAAGAAAATGCGTAGAACGGGGAAAATTCCTA-TAAATTATTTCTG 776
||||||| |||||||||||||||| || |||| |||||| |||||| ||| |||||||||
Sbjct 718 GTTCATGGAAAAGTAAAGAAAATGAGTCGAACAGGGAAAGTTCCTAATAA-TTATTTCTG 776
Query 777 CTTTCGATGTTACT 790
|||||| |||||||
Sbjct 777 CTTTCGGTGTTACT 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5