BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332390

Length=786
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61490.1 | Symbols:  | Uncharacterised conserved protein (UC...   865    0.0  
  AT5G61495.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   231    6e-60


> AT5G61490.1 | Symbols:  | Uncharacterised conserved protein (UCP012943) 
| chr5:24732642-24733666 FORWARD LENGTH=783
Length=783

 Score =  865 bits (468),  Expect = 0.0
 Identities = 573/622 (92%), Gaps = 14/622 (2%)
 Strand=Plus/Plus

Query  178  GAGGAAGAGTTTGAATGGGTGGCTGTAGATAAAGAGATTGATCTTATTACGGATAAAGCT  237
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  163  GAGGAAGAGTTTGAATGGGTGGCTGTAGATAAAGAGATTGATCTTGTTACGGATAAAGCT  222

Query  238  CCGGAACTTGAC---------GACGCTTTCTCTGCACTTCAGTTGATGTTCAATGATGAT  288
            ||||||||||||         || ||||||||||||||||| ||||||||||||||||||
Sbjct  223  CCGGAACTTGACGAAGTTGATGATGCTTTCTCTGCACTTCAATTGATGTTCAATGATGAT  282

Query  289  GA--A-GAAGAATCAGGAGACCAAGTTTCAGAGTCGGAGTTTGTGGATTGGATTGAGCCT  345
            ||  | |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct  283  GATGACGAAGAATCAGGAGACCAACTTTCAGAGTCAGAGTTTGTGGATTGGATTGAGCCT  342

Query  346  CCATTGCAGCTCTGCAATACTAGACTTCTACAGCCTTATATGCTTGACAGACTCTACGAC  405
             | |||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| |||
Sbjct  343  TCGTTGCAGCTTTGCAATACTAGCCTTCTACAGCCTTTTATGCTGGACAGACTCTATGAC  402

Query  406  GCCTTTCATGTGTTTCAGACCGATCCATCTGTTCAGAGAATGGTTATGTCCTTGACTTCA  465
            ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  403  GCCTTTCATGTGTTTCAGACCGACCCATCTGTTCAGAGAATGGTTATGTCATTGACTTCA  462

Query  466  GACAAGGCTGTTTGGGGTGCGGTGATGAGTAATGAGGTTGTCCGGGAGCTCATAAGTAAA  525
            |||||||||||||||| |||||||||||  |||||||||||||||||||| ||||| || 
Sbjct  463  GACAAGGCTGTTTGGGATGCGGTGATGAACAATGAGGTTGTCCGGGAGCTTATAAGCAAC  522

Query  526  GCTGAGAGGTCAGAAGAAGACTCTGGTTCAGCCGCAAATTGCTTGAGAAGGTTGTTTGAG  585
            |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct  523  GCTGAGAGGTCAGAAGAAGACTCTGGTTCAGCCGCAAATTTCTTAAGAAGGTTGTTTGAG  582

Query  586  AGAAGTGCCGTCAAAATCATGGACGCAATGGAGAGAGTCACAAAGTACGTCACTGAACTC  645
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || 
Sbjct  583  AGAAGTGCCGTCAAAATCATGGACGCAATGGAGAGAGTCACAAAGTATGTCACTGACCTT  642

Query  646  TTCAATGTTGTTCCTGGAGATGAGACTGTTGTGTTAGCCTCAGGTGCTGTGCCTGTGATG  705
            ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||  ||||
Sbjct  643  TTCAACGTTGTTCCTGGAGATGAGACGGTTGTGTTAGCCTCAGGTGCTGCGCCTAAGATG  702

Query  706  GAGAAGCTTCAGATGACTGTTCTGCTCGCCATTCTTGTCCTGCTTATCGTGTTAGTTAAA  765
            ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
Sbjct  703  GAGAAGCTTCAAATGACGGTTCTGCTCGCCATTGTTGTCCTGCTTATCGTGTTAGTTACA  762

Query  766  CGAGTAACGAGAG-GTAGATAG  786
            |||||||| || | ||||||||
Sbjct  763  CGAGTAACAAG-GTGTAGATAG  783


> AT5G61495.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 0 Blast hits 
to 0 proteins in 0 species (source: NCBI BLink). | chr5:24732768-24733485 
REVERSE LENGTH=432
Length=432

 Score =  231 bits (125),  Expect = 6e-60
 Identities = 160/176 (91%), Gaps = 6/176 (3%)
 Strand=Plus/Minus

Query  435  TGTT-CAGAGAATGGTTATGTCCTTGACTTCAGACAAGGCTGTTTGGGGTGCGGTGATGA  493
            |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct  175  TGTTGCAGAGAATGGTTATGTCATTGACTTCAGACAAGGCTGTTTGGGATGCGGTGATGA  116

Query  494  GTAATGAGGTTGTCCGGGA---GCT-CATAAGTAAAGCTGAGAGGTCAGAAGAAGACTCT  549
              |||||||||||||||||   | |  |||| |  |||||||||||||||||||||||||
Sbjct  115  ACAATGAGGTTGTCCGGGAGTTGTTGTATAA-TGCAGCTGAGAGGTCAGAAGAAGACTCT  57

Query  550  GGTTCAGCCGCAAATTGCTTGAGAAGGTTGTTTGAGAGAAGTGCCGTCAAAATCAT  605
            |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  56   GGTTCAGCCGCAAATTTCTTAAGAAGGTTGTTTGAGAGAAGTGCCGTCAAAATCAT  1


 Score =  132 bits (71),  Expect = 6e-30
 Identities = 73/74 (99%), Gaps = 0/74 (0%)
 Strand=Plus/Minus

Query  178  GAGGAAGAGTTTGAATGGGTGGCTGTAGATAAAGAGATTGATCTTATTACGGATAAAGCT  237
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  396  GAGGAAGAGTTTGAATGGGTGGCTGTAGATAAAGAGATTGATCTTGTTACGGATAAAGCT  337

Query  238  CCGGAACTTGACGA  251
            ||||||||||||||
Sbjct  336  CCGGAACTTGACGA  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38228185867


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5