BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332399
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61570.1 | Symbols: | Protein kinase superfamily protein | ... 1351 0.0
AT5G07620.1 | Symbols: | Protein kinase superfamily protein | ... 617 5e-176
> AT5G61570.1 | Symbols: | Protein kinase superfamily protein
| chr5:24758347-24760652 FORWARD LENGTH=1697
Length=1697
Score = 1351 bits (731), Expect = 0.0
Identities = 871/938 (93%), Gaps = 12/938 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAAATCCCATTTGGTAAAACTGATACTTGCAGTATCTCTGCCAACAACATTCTTG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 161 ATGAGAAAATCCCATTTGGTAAAACTGATACTTGCAGTATCTCTACCAACAACATTCTTG 220
Query 61 ATCATAATCGCTATCATCATAATCTTCATCTTCTGCAGAAGAAGAAAAACAGAGACCAAT 120
||||| ||||| ||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 221 ATCATGATCGCCATCATCATAATCTTCATCTTCTGTAGAAGAACAACAACAGAGACCAAT 280
Query 121 GAAGCTCAATACAACGTCGAATCTCCTTATGATGAGAAAGAAG-ATTTT----T-CCGGA 174
|||| ||||||| ||||||||||||| | | | |||||| ||| ||||| | ||||
Sbjct 281 GAAGTTCAATACGACGTCGAATCTCC-T-T-ACGAGAAACAAGAATTTTCCGATAACGGA 337
Query 175 TCCGAAACAGAGGAGGAGCTTGTAATCTTAAACGGTGGAGACGATCTAACCATCTGTGAT 234
||||||||||||||||||||| | ||||| ||||||||||| |||||||| ||||| |||
Sbjct 338 TCCGAAACAGAGGAGGAGCTTATCATCTTCAACGGTGGAGAAGATCTAACGATCTGCGAT 397
Query 235 ATCCTTGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACATTATACAAAGCG 294
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 ATACTCGATGCTCCAGGAGAAGTCATCGGAAAATCAAGCTACGGTACATTATACAAAGCG 457
Query 295 ACGTTGCAGAGAAGTGGGAAAGTTAGGGTTCTTAGATTCCTTCGACCTTTGTGTGCAGTG 354
||||| || ||||||||||||||||| |||||||| |||||||||||||| ||||| |||
Sbjct 458 ACGTTACAAAGAAGTGGGAAAGTTAGAGTTCTTAGGTTCCTTCGACCTTTATGTGCTGTG 517
Query 355 AAATCGGATGCTAAGGAGTTTAATGGCGTCATTGAGTCGCTTGGATTTGTTCGACATGAT 414
|| || ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 518 AATTCAGATTCTAAGGAGTTTAATGGCGTCATTGAGTCACTTGGGTTTGTTCGACATGAT 577
Query 415 AATTTGGTTCCTCTGTTAGGGTTTTATGTTGGGAACAGAGGAGAGAAGCTTATGATTCAT 474
||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 578 AATCTCGTTCCTCTGTTAGGGTTTTACGTTGGCAACAGAGGAGAGAAGCTTATGATTCAT 637
Query 475 CCTTTCTT---TGGTTCCGGGAATCTTTCTGAGTTCATCAAATTTTTGGCAGGTGGAGAT 531
|| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 638 CCCTTCTTCGGTAGTTCCGGGAATCTTTCTGCGTTCATCAAATTTTTGGCAGGTGGAGAT 697
Query 532 GTTGACGCACACAAATGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAAGCTCTT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GTTGACGCACACAAATGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAAGCTCTT 757
Query 592 GATCATCTCCACACGGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCGAAAAAT 651
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GATCATCTCCATACAGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCGAAAAAT 817
Query 652 GTTCTTCTAGACCAGAGTTTTAGGCCTAGAGTCTCTGATTTCGGTTTGCATTTGCTCTTG 711
||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 818 GTTCTACTAGACAAGAGTTTTAGGCCTAGAGTCTCTGATTTCGGCTTGCATTTGCTTTTG 877
Query 712 AACCTCGCGGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGATACAAAGCGCCT 771
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 878 AACCTTGCAGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGTTACAAAGCGCCT 937
Query 772 GAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTGTATAGTTTCGGTGTGATC 831
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 938 GAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTATATAGTTTCGGTGTGATC 997
Query 832 ATGCTTGAGTTAGTCTCTGGTAAAGAGCCAATAAACAAGAATCCAAAGGGTTCTATTCTT 891
||||||||||||||||||||||||||||| | |||||||||||||| ||| ||| | |||
Sbjct 998 ATGCTTGAGTTAGTCTCTGGTAAAGAGCCGACAAACAAGAATCCAACGGGATCTGTACTT 1057
Query 892 GATCATAATAGGTTGTCGGATTTGTACCGTCCTGAGAT 929
|||| |||||||||||||||||||||||||||||||||
Sbjct 1058 GATCGTAATAGGTTGTCGGATTTGTACCGTCCTGAGAT 1095
> AT5G07620.1 | Symbols: | Protein kinase superfamily protein
| chr5:2407401-2409066 REVERSE LENGTH=1080
Length=1080
Score = 617 bits (334), Expect = 5e-176
Identities = 589/709 (83%), Gaps = 30/709 (4%)
Strand=Plus/Plus
Query 178 GAAACAGAGGAGGAGCTTGTAATC-TTAAACGGTGGAGACGATCTAACCATCTGTGATAT 236
||||||||||| | || |||||| || || || ||||| ||||| || ||||| |||||
Sbjct 166 GAAACAGAGGA--A-CTCGTAATCTTTCAA-GGCGGAGAAGATCTCACGATCTGCGATAT 221
Query 237 CCTTGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACAT-TATACAAAGCGA 295
||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 222 CCTCGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTATGGTAC-TCTATACAAAGCGT 280
Query 296 CGTTGCAGAGAAGTGGGAA-AGTTAGGGTTCTTAGATTCCTTCGACCTTTGTGTGCAGTG 354
| || || ||||| || || | ||||||||||||| || ||| |||| ||||| |||||
Sbjct 281 CTTTACAAAGAAGCGGCAAGA-TTAGGGTTCTTAGGTTTCTTAGACCGGTGTGTACAGTG 339
Query 355 AAATCGGATGCTAAGGAGTTTAATGGCGTCATTGAGTCGCTTGGATTTGTTCGACATGAT 414
| ||||||| |||| |||||||||||| |||| || | ||||| ||||||||||||||
Sbjct 340 AGATCGGATTCTAAAGAGTTTAATGGCATCATCGAAACACTTGGGTTTGTTCGACATGAG 399
Query 415 AATTTGGTTCCTCTGTTAGGGTTT-TATGTTGGGAACAGAGGAGAGAAGCTTATGATTCA 473
|||||||||||||||||||| ||| || | ||| ||||||||||||||||||||| ||||
Sbjct 400 AATTTGGTTCCTCTGTTAGG-TTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTCA 458
Query 474 TCCTTTCTTTGGTTCCGGGAATCTTTCTGAGTTCATCAAATTTTTGGCAGGTGGAGATGT 533
||||||||| ||||||||||||||||| || ||||||| | || ||||||||
Sbjct 459 TCCTTTCTTCGGTTCCGGGAATCTTTCCGACTTCATCAGA--------AG-TGGAGATGA 509
Query 534 TGACGCACACAAA-TGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAAGCTCTTG 592
||| || | ||| |||| ||| ||||| || ||||| ||||||||| | ||||| ||||
Sbjct 510 TGAATCA-AGAAAATGGATCAATATTTTAAGAATCACAATTGGAATATCGAAAGCCCTTG 568
Query 593 ATCATCTCCACACGGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCGAAAAATG 652
||||||| || || |||||||| ||||| || || || || ||||||||||| || || |
Sbjct 569 ATCATCTTCATACAGGAATGCAAAAACCAATCGTCCATGGCAATCTGAAGTCCAAGAACG 628
Query 653 TTCTTCT-AGACCAGAGTTTT-AGGCCTAGAGTCTCTGATTTCGGTTTGCATTTGCTCTT 710
||||||| || | |||||| | |||||| |||||||||||||||| |||||||||||
Sbjct 629 TTCTTCTCAGTTC-GAGTTTCGAA-CCTAGAATCTCTGATTTCGGTTTACATTTGCTCTT 686
Query 711 GAACCTCG-CGGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGATACAAAGCGC 769
|||||| | | || || |||||| |||| || | ||| || || |||||||||||||| |
Sbjct 687 GAACCT-GTCTGCAGGACAAGAGATTCTTGATGTTTCTGCAGCTGAGGGATACAAAGCTC 745
Query 770 CTGAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTGTATAGT-TTCGGTGTG 828
||||||| || ||||||||||| || ||||| |||||||||||||||||| || ||||||
Sbjct 746 CTGAGTTAATAAAGATGAAGGACGTGAGCAAAGAGAGTGATGTGTATAGTCTT-GGTGTG 804
Query 829 ATCATGCTTGAGTTAGTCTCTGGTAAAGAGCCAATAAACAAGAATCCAA 877
|||||||||||| |||||||||||||||| || |||||| ||||| |||
Sbjct 805 ATCATGCTTGAGCTAGTCTCTGGTAAAGAACCGATAAACGAGAATGCAA 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5