BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332437

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62040.1 | Symbols:  | PEBP (phosphatidylethanolamine-bindin...   876    0.0  


> AT5G62040.1 | Symbols:  | PEBP (phosphatidylethanolamine-binding 
protein) family protein | chr5:24922810-24923709 FORWARD 
LENGTH=534
Length=534

 Score =  876 bits (474),  Expect = 0.0
 Identities = 514/534 (96%), Gaps = 0/534 (0%)
 Strand=Plus/Plus

Query  1    ATGTCAAGAGAAATAGAACCACTAATAGTAGGAAGAGTGGTAGGAGATGTACTAGAAATG  60
            ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct  1    ATGTCAAGAGAAATAGAGCCACTAATAGTGGGAAGAGTGATAGGAGATGTACTCGAAATG  60

Query  61   TTCAATCCAAGCGTGACAATGAGAGTCACTTTCAATTCCAACACAATCGTCTCTAATGGT  120
            || |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  61   TTTAATCCAAGTGTGACAATGAGAGTCACTTTCAATTCCAACACAATCGTATCCAATGGT  120

Query  121  CACGAGCTCGCGCCTTCTCTTCTCCTCTCTAAGCCTCGAGTTGAGATCGGTGGCCAAGAT  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  CACGAGCTCGCGCCTTCTCTTCTCCTCTCTAAGCCTCGCGTTGAGATCGGTGGCCAAGAT  180

Query  181  CTTCGTTCCTTCTTCACCTTAATCATGATGGACCCCGATGCCCCGAGTCCTAGTAATCCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTTCGTTCCTTCTTCACCTTAATCATGATGGACCCCGATGCCCCGAGTCCTAGTAATCCT  240

Query  241  TATATGCGTGAATATCTGCATTGGATGGTGACAGATATTCCCGGGACAACCGATGCTTCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TATATGCGTGAATATCTGCATTGGATGGTGACAGATATTCCCGGGACAACCGATGCTTCT  300

Query  301  TTTGGGAGAGAGATAGTGAGATACGAAACGCCTAAACCAGTGGCGGGAATACACAGATAC  360
            ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct  301  TTTGGGAGAGAGATAGTGAGATATGAGACGCCTAAACCGGTGGCGGGAATACACAGATAC  360

Query  361  GTCTTTGCGCTATTCAAACAGAGAGGAAGGCAAACTGTGAAGGCAGGGCCAGAAACCAGA  420
            |||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||| |||
Sbjct  361  GTCTTTGCGCTATTCAAACAGAGAGGGAGGCAAGCTGTGAAGGCAGCGCCGGAAACTAGA  420

Query  421  GAGTGTTTCAACACAAAAGCATTCTCTTCTTACTTTGGTCTTTCTCTACCTGTTGCTGCT  480
            ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct  421  GAGTGTTTCAACACAAACGCTTTCTCTTCTTACTTTGGTCTTTCTCAACCTGTTGCTGCT  480

Query  481  GTTTACTTCAACGCCCAACGTGAAACTGCTCCTCGACGACGTCCTTCTTATTAA  534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GTTTACTTCAACGCCCAACGTGAAACTGCTCCTCGACGACGTCCTTCTTATTAA  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5