BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332444
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62110.1 | Symbols: | Homeodomain-like superfamily protein ... 880 0.0
> AT5G62110.1 | Symbols: | Homeodomain-like superfamily protein
| chr5:24942169-24946081 REVERSE LENGTH=2192
Length=2192
Score = 880 bits (476), Expect = 0.0
Identities = 808/960 (84%), Gaps = 56/960 (6%)
Strand=Plus/Plus
Query 527 GTAATGACAATGGATATCTTGGTGAAAGTCT-GGACGCCATGAACTGGAATCTCTATAAC 585
|||||| ||| || |||||||||||||||| || ||||||||||||||||||| | |||
Sbjct 458 GTAATGGCAACGGGCATCTTGGTGAAAGTCTAGG-CGCCATGAACTGGAATCTCAACAAC 516
Query 586 AACAATGTGAGGAACCATGGGAGTTCAACTTCGA-G--------------------GTTC 624
|| ||||||||||| ||| |||||||||||||| | ||||
Sbjct 517 AATGATGTGAGGAACTATGAGAGTTCAACTTCGAGGTTTTCCTCTCCATTTTCATCGTTC 576
Query 625 TTACACAACAAGGTTCAACCACATCACAATTTCACTGCACAAACGGATGATCTGCTACCT 684
||||||||||||||||| |||||||||||||| | | |||||||||||| |||||| ||
Sbjct 577 TTACACAACAAGGTTCAGCCACATCACAATTTAATTTCACAAACGGATGGTCTGCTTTCT 636
Query 685 AGAAGCATCTTTGATACATCTCAAGCGCCTCAAGTTCCTTCATTTGGACAGTATGGTATA 744
| ||||||| |||||||| | ||||||||||||| |||||||| |||||||||
Sbjct 637 ACAAGCATCCTTGATACA--T-------CTCAAGTTCCTTCTTTTGGACAATATGGTATA 687
Query 745 ACAAATGATGTTATCGGTAT-GAACCCTGGTTTTGGTACTGGTTATATGCATAATAACTA 803
||||||||||| ||||||| ||| |||| ||||||||| |||| ||||||| ||||||
Sbjct 688 CCAAATGATGTTGTCGGTATGGAA-CCTGAATTTGGTACTAGTTACATGCATAGTAACTA 746
Query 804 CACTGGTATCAATACTGATCAAATTGGAAATCTGGGTGGACTTGGTGGAGCAAGAGTTTA 863
|| ||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||| |
Sbjct 747 CAATGGTATCAATACTGATCAAGTTGGAAATCTGGTTGGACTTGGTAGAGAAAGAGTTAA 806
Query 864 TGGTGATGGTAATGTCTCTCTTGGTCAAAATTCGGGTACCATAAACTGGAATTTCGATGA 923
|| | ||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 807 TGTTAATGGTAATGTCTCTCTTGGTCAAAATTTGGGTAGTATGAATTGGAATTTCGATGA 866
Query 924 AAACAACATGAGTAATTATGGAAGTTCAAATTCGAGGTTTTCTTCTCCATTATCATTGTT 983
|||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 867 AAACAACATGAGTAATCATGGAAGTTCAACTTCGAGGTTTTCTTCTCCATTTTCATCATT 926
Query 984 CAATGAAGAGCAGTCACTGAGTCATTTAAATGCGCAAACGGATGAGTTGGTTCCTGTACT 1043
| | | || |||||||| ||||||||||| | | |||| ||||||||||||||| | |
Sbjct 927 CGA-G--GATCAGTCACTAAGTCATTTAAACGAGGAAACAAATGAGTTGGTTCCTGGATT 983
Query 1044 AGAGAATCTAAGCTTGTACAATGATCATCAGAGCATCAACCCATTTTCT-GGCAAT---- 1098
||||||||||||| | |||||||||||||| ||||||||||||||| || ||||||
Sbjct 984 AGAGAATCTAAGCCTATACAATGATCATCAAAGCATCAACCCATTT-CTTGGCAATACGA 1042
Query 1099 T-----CCAATTTTCTTCA-ATATCAGCATCAAGGTCAAGTGAGTGAT-ACAAATTTTCA 1151
| || ||||| || | | ||||| |||||||| ||||| | || | |||| || |
Sbjct 1043 TTAATTCCCATTTTGTTGAGA-ATCAGGATCAAGGTTTAGTGAATAATGA-AAATCTTGA 1100
Query 1152 ATTTGCCAACCATGATCAACTGGaaaaaaaTGCAATGCTTGCTGCTTGTTCTACTGAGGA 1211
|||||| ||| ||||||||||||||| |||| ||| ||| || ||| |||| ||||||
Sbjct 1101 ATTTGCTAACGATGATCAACTGGAAAGGAATGAAATTCTTACTACTTATTCTGTTGAGGA 1160
Query 1212 CATTAATAATTTGAGCATTAATAACGTGAAGG-AAAGCTCTAATGAGGAAACATTGAATT 1270
|||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1161 TATTAATAATTTGAGCATTAATAACGTGAAGTTAAA-CTCTAATGGGGAAACATTGAATT 1219
Query 1271 CTATTGCTGCTAATTTGGAAATGCTTTTTCCTACTCATGACATGAACATTATAAATCAGC 1330
||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1220 CTACTGCTGCTAATTTGGAAATGCTTTTTCCTACTCTTGACATGAACATTGTAAATCAGC 1279
Query 1331 ATCAAGGTCAAGTGTTGAGTGGTGAAAATCGTGAATTTGCCAATGATAATCAACTT-AAT 1389
|||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||
Sbjct 1280 ATCAAGGTCAAGTGTTGAGTGGTGGAAATCTTGAATTTGCCAACGATAATCAACTTGAA- 1338
Query 1390 AGGAATTCAATTCTTGCTACTCATTCTCTTGAGGATATTAATTATTTGTGCATTAATAAC 1449
|||||| ||||||||||| | ||||| |||||||||||||| ||||| |||||||||||
Sbjct 1339 AGGAATGCAATTCTTGCTGGTTATTCTATTGAGGATATTAATAATTTGAGCATTAATAAC 1398
Score = 202 bits (109), Expect = 1e-50
Identities = 182/216 (84%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 1120 CATCAAGGTCAA--G-TGAGTGATACAAATTTTCAATTTGCCAACCATGATCAACTGGaa 1176
|||||||||||| | |||||| | ||||||| ||||||||||| || ||||| | |||
Sbjct 1399 CATCAAGGTCAAGTGTTGAGTGGTGTAAATTTTGAATTTGCCAACGATAATCAATTCGAA 1458
Query 1177 aaaaaTGCAATGCTTGCTGCTTGTTCTACTGAGGACATTAATAATTTGAGCATTAATAAC 1236
| |||||||| ||||||| || ||||| |||||| ||||||||||||||||||||||||
Sbjct 1459 AGGAATGCAATTCTTGCTGGTTATTCTATTGAGGATATTAATAATTTGAGCATTAATAAC 1518
Query 1237 GTGAAGGA-AAGCTCTAATGAGGAAACATTGAATTCTATTGCTGCTAATT-TGGAAATGC 1294
||||| || || ||||||||| ||||||||||| ||||||||||||||| || |||||
Sbjct 1519 GTGAATGACAA-CTCTAATGAAGAAACATTGAACTCTATTGCTGCTAATAATG-AAATGA 1576
Query 1295 TTTTTCCTACTCAT-GACATGAACATTATAAATCAG 1329
|||| ||| || | ||| |||||| ||||||||||
Sbjct 1577 ATTTTACTATTC-TCGACGTGAACACTATAAATCAG 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95079832230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5