BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332445
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62120.1 | Symbols: ARR23, RR23 | response regulator 23 | ch... 363 1e-99
> AT5G62120.1 | Symbols: ARR23, RR23 | response regulator 23 |
chr5:24946955-24948225 REVERSE LENGTH=438
Length=438
Score = 363 bits (196), Expect = 1e-99
Identities = 392/477 (82%), Gaps = 51/477 (11%)
Strand=Plus/Plus
Query 1 ATGACAGCAAAAGATTCGTCAGCAGCAGTAACTGCACTTAGAGGTCAATTCAACAAAATA 60
|||||||||||||||||||||| | |||| ||| | ||| | |||||||||||| |||
Sbjct 1 ATGACAGCAAAAGATTCGTCAGAACCAGTTACTACGCTT--A-CTCAATTCAACAATATA 57
Query 61 GATGTTGTAATCACCGATTACCATATGCCTGGTTTGAAATTGAATGGTGTTCAGCTAAAA 120
|||||||||||||||||||||||||||||||||||||| | | | |||||||||||||
Sbjct 58 GATGTTGTAATCACCGATTACCATATGCCTGGTTTGAA-T-G---G-TGTTCAGCTAAAA 111
Query 121 CAGAGAATTGCTGAAGAATTTGGGAATTTACCAGTTATTGGTATATTTGGACAGGAACAT 180
||||||||| |||||||||||||||||| || ||||||| | ||| ||||||||||
Sbjct 112 AAGAGAATTGATGAAGAATTTGGGAATTTGCCTGTTATTGATCTAT----ACAGGAACAT 167
Query 181 AGAGCACGCGAGGCGTTGTC-C-TGCGGAGCTCTTTGTTTCATGCGTCAACCAATCTCAC 238
||||||| ||| ||||| | | || ||||||||||||||||| | ||||||||||||
Sbjct 168 TGAGCACG--AGGAGTTGTTTCGT-CG-AGCTCTTTGTTTCATGCATAAACCAATCTCAC 223
Query 239 ATCGTGA-C-C-------TCAACGTTGTATGTGAACAAGCTCTCCGCCATAAAATGAACG 289
|||||| | | |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 224 GTCGTGATCTCAACAGCCTCAACGTTGTATGTCAACAAGCTCTCCGCCATAGAATGAACG 283
Query 290 GAGAAACCGATCCAAATGGTTCGAAACAAAATGGGAAGAGACCATCAACCAACGATTCAG 349
|||||||| || |||||||||| |||||||| || || | | ||| |||
Sbjct 284 GAGAAACCAATTTAAATGGTTCGGGACAAAATGTGA-----CCG--A-C----GATCCAG 331
Query 350 ATGATGGAAAACATTGGCTACGGCTTCGAGAGAAGCCTAAGCTCAAATGGACAAAACCTC 409
||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 332 ATGAT--------T-GGCTACGGCTTCGAGAAAAGCCTAAGCTCAAATGGACAAAACCTC 382
Query 410 TTCAGTC-TAGATTCATGAGAGCCCTTAAAAACCTTGGTGTTGCTAGTAAGTATTAA 465
||||| | |||||||||||| || ||||||| ||||||||| |||||||||||||||
Sbjct 383 TTCAG-CATAGATTCATGAGCGCTCTTAAAAGCCTTGGTGTCGCTAGTAAGTATTAA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22103024680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5