BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332462
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62280.1 | Symbols: | Protein of unknown function (DUF1442)... 1066 0.0
> AT5G62280.1 | Symbols: | Protein of unknown function (DUF1442)
| chr5:25017073-25018246 FORWARD LENGTH=1064
Length=1064
Score = 1066 bits (577), Expect = 0.0
Identities = 668/712 (94%), Gaps = 5/712 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTTTGGTCTGCTGAGAATGCTACAAAAGCCTATCTTAGTACATTGAAAACGGAT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 93 ATGGCTTTTTGGTCTGCTGAGAATGCTACTAAAGCCTATCTTAGTACATTGAAAACGGAT 152
Query 61 CAAAGGACAAAAGAACCAAACGTGGCCGAATTCATATCAGCCCTAGCGGCCGGCAATAGC 120
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 153 CAAAGGACAAAAGAACCAAACGTCGCCGAATTCATATCAGCCCTAGCCGCCGGAAATAGC 212
Query 121 GCCAGAAAAATTGCTGTGGCTTGCGCCGGAGCAGCAAACGCGGACATACTCGTTGCCCTA 180
|| ||||| || || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 213 GCTAGAAAGATAGCCGTGGCTTGCGCCGGAGCAGCAAACGCCGACATACTCGTTGCACTA 272
Query 181 ATCGCAGCAGCCAACCAAACTCGCGGTCAAGTTGTATGCGTTTTACGCGGCATTGAAGAA 240
|||||||| || |||||||| || ||||||||||||||||||||||| || || ||||||
Sbjct 273 ATCGCAGCGGCTAACCAAACGCGTGGTCAAGTTGTATGCGTTTTACGTGGTATCGAAGAA 332
Query 241 CTAATCATAT-CCAAGAAAATGTTGGAACCATCAGAGATTCATCAGATACAATTCGTTGT 299
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 333 CTAATCATATCCCAA-AAAATGTTGGAACCATCAGAGATTCATCAGATACAATTCGTAGT 391
Query 300 CGGAGAATCTAACGACGACATTCTAATCAATGATCATTTCGGAGAAGCAGATTTCGTTCT 359
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 392 CGGAGAATCTAACGACGACACTCTAATCAATAATCATTTCGGAGAAGCAGATTTCGTCCT 451
Query 360 CGTGGATTGTAACCTCGAGAACCACCAAGAGATCGTTAGAAAGATCCTTAATCATCACGC 419
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 452 CGTGGATTGTAACCTCGAAAACCACCAAGAGATCGTTGGAAAAATCCTTAATCATCACGA 511
Query 420 AGAAAACGCTAGAACCGGTGGTGGAAGCGGTATGGCGGTTGTGGTGGGTTATAACGCGTT 479
||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 512 AGAAAACGCAAGAACCGGGGGTGGAAGCGGTGTGGCGGTTGTGGTGGGTTATAACGCGTT 571
Query 480 TTCGAGAGGGTCGTGGAGGTTTAGCGATGGTAGGAAAACGCAGTTTTTGCCTATAGGAGA 539
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 572 TTCGAGAGGGTCATGGAGGTTTAGCGATGGAAGGAAAACGCAGTTTTTACCTATAGGAGA 631
Query 540 AGGGTTGCTTGTGACGAGGGTCAACGATAATCAGAAGATGCCGATGAAAAATCACCATCG 599
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 632 AGGGTTACTTGTGACGAGGGTCAATGATAATCAGAAGATGATGATGAAAAATCACCATCG 691
Query 600 TGAGCAA--G-TGAGGAAGAGTCGTTGGGTGGTGAAGGTTGATAAGTGCACTGGAGAGGA 656
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TGACCAAGTGATGAGGAAGAGTCGTTGGGTGGTGAAGGTTGATAAGTGCACTGGAGAGGA 751
Query 657 ACATGTGTTTAGGGTTAGGGTTCCAAGAGGAGAAGCCATTATTGAGGCTTAA 708
|||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 752 ACATGTGTTTAGGGTTAGGGTTCCCCGAGGAGAAGCCATTATTGAAGCTTAA 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5