BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332471
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62380.1 | Symbols: VND6, ANAC101, NAC101 | NAC-domain prote... 1709 0.0
AT1G79580.1 | Symbols: SMB, ANAC033 | NAC (No Apical Meristem) ... 100 2e-20
> AT5G62380.1 | Symbols: VND6, ANAC101, NAC101 | NAC-domain protein
101 | chr5:25050684-25051858 FORWARD LENGTH=1047
Length=1047
Score = 1709 bits (925), Expect = 0.0
Identities = 1009/1050 (96%), Gaps = 3/1050 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGTCTCGTACACATTCCTCCCGGTTATCGATTCCATCCGACCGATGAAGAACTC 60
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAGTCTCGCACACATTCCTCCCGGTTATCGATTCCATCCGACCGATGAAGAACTC 60
Query 61 GTTGACTATTATCTCAAGAACAAAGTTGCATTCCCGGGAATGCAAGTTGACGTTATCAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTGACTATTATCTCAAGAACAAAGTTGCATTCCCGGGAATGCAAGTTGATGTTATCAAA 120
Query 121 GATGTTGATCTCTACAAAATTGAGCCATGGGACATTCAAGAGTTATGTGGAAGAGGGACA 180
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GATGTTGATCTCTACAAAATCGAGCCATGGGACATCCAAGAGTTATGTGGAAGAGGGACA 180
Query 181 GGAGAAGAGAGGGAATGGTATTTCTTTAGCCACAAGGACAAGAAATACCCAACTGGGACA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGAGAAGAGAGGGAATGGTATTTCTTTAGCCACAAGGACAAGAAATATCCAACTGGGACA 240
Query 241 CGAACCAATAGAGCAACTGGCTCCGGATTTTGGAAAGCAACGGGTCGAGACAAGGCCATA 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAACCAATAGAGCAACGGGCTCCGGATTTTGGAAAGCAACGGGTCGAGACAAGGCCATT 300
Query 301 TACTCGAAGCAAGAGCTTGTTGGTATGAGGAAGACTCTTGTGTTTTACAAAGGTAGGGCC 360
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 301 TACTCAAAGCAAGAGCTTGTTGGGATGAGGAAGACTCTTGTCTTTTACAAAGGTAGGGCC 360
Query 361 CCGAATGGTCAGAAATCCGATTGGATAATGCACGAATACCGTCTCGAGACCGATGAAAAT 420
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 CCAAATGGTCAGAAATCTGATTGGATAATGCACGAATACCGTCTTGAGACCGATGAAAAT 420
Query 421 GGACCACCTCATGAGGAAGGATGGGTGGTTTGCCGCGCTTTCAAGAAGAAACTAACCACA 480
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 421 GGACCGCCTCATGAGGAAGGATGGGTGGTTTGTCGCGCTTTCAAGAAGAAGCTAACCACG 480
Query 481 ATGAATTACAACAATCCAAGAACAATGATTGGATCATCATCTGGCCAAGAATCTAATTGG 540
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 481 ATGAACTACAACAATCCAAGAACAATGATGGGATCATCATCAGGCCAAGAATCTAACTGG 540
Query 541 TTCGCGCAGCAAATGGATGTGTCTAATGGTAATTACTATCATCTTCCTGATCTAGAGAGT 600
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCACGCAGCAAATGGATGTGGGGAATGGTAATTACTATCATCTTCCTGATCTAGAGAGT 600
Query 601 CCAAGAATGTTTCAAGGCtcatcatcatcatcaatatcatcatTACACCAGAATGATCAA 660
|| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 601 CCGAGAATGTTTCAAGGCTCATCATCATCATCACTATCATCATTACATCAGAATGATCAA 660
Query 661 GACCCTTATGGTGTCGTACTAAGCACTATTAACGCAAATTCTGCAACCACAATAATGCAA 720
|||||||||||||||||||| |||||||||||||| || | |||| ||||||||||||
Sbjct 661 GACCCTTATGGTGTCGTACTCAGCACTATTAACGC-AA--CCCCAACTACAATAATGCAA 717
Query 721 CGAgatgatggtcatgtgattaccaatgatgatgatcacatgatcatgatgaACACAAGT 780
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 CGAGATGATGGTCATGTGATTACCAATGATGATGATCATATGATCATGATGAACACAAGT 777
Query 781 ACTGGTGATCATCATCAATCAGGATTACTAGTCAATGATGATCATAATGATCAAGTAATG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACTGGTGATCATCATCAATCAGGATTACTAGTCAATGATGATCATAATGATCAAGTAATG 837
Query 841 GATTGGCAAACGCTTGATAAGTTTGTTGCTTCGCAGCTAATCATGAGCCAAGAAGAGGAA 900
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 GATTGGCAAACGCTTGACAAGTTTGTTGCTTCTCAGCTAATCATGAGCCAAGAAGAGGAA 897
Query 901 GAAGTTAACAAAGATCCATCAGATAATTCTTCGAATGAAACATTTCATCAACTCTCTGAA 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 GAAGTTAACAAAGATCCATCAGATAATTCTTCGAATGAAACATTTCATCATCTCTCTGAA 957
Query 961 GAGCAAGCTGCAACAATGGTTTCGATGAATGCCTCTTCCTCTTCTTCTCCATGTTCCTTC 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 GAGCAAGCTGCAACAATGGTTTCGATGAATGCTTCTTCCTCTTCTTCTCCATGTTCCTTC 1017
Query 1021 TACTCTTGGGCTCAAAATACACACACGTAA 1050
||||||||||||||||||||||||||||||
Sbjct 1018 TACTCTTGGGCTCAAAATACACACACGTAA 1047
> AT1G79580.1 | Symbols: SMB, ANAC033 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr1:29940896-29943442
REVERSE LENGTH=1534
Length=1534
Score = 100 bits (54), Expect = 2e-20
Identities = 160/210 (76%), Gaps = 11/210 (5%)
Strand=Plus/Plus
Query 196 TGGTATTTCTTTAGCCACAAGGACAAGAAATACCCAACTGGGACACGAACCAATAGAGCA 255
|||||||||||||||||||||||||||||||| || |||||||| ||||| || | ||
Sbjct 520 TGGTATTTCTTTAGCCACAAGGACAAGAAATATCCGACTGGGACCCGAACGAACCGGGCG 579
Query 256 ACTGGCT-CCGGATTTTGGAAAGCAACGGGTCGAGACAAGGCCATATA-CTCGA-AGC-- 310
|| | | |||| || |||||||| || ||| ||||||| ||||| | ||| | |||
Sbjct 580 ACAG-CAGCCGGGTTCTGGAAAGCTACTGGTAGAGACAAATCCATACATCTCAACAGCTC 638
Query 311 -AAGA-GCTTGTTGGTATGAGGAAGACTCTTGTGTTTTACAAAGGTAGGGCCCCGAATGG 368
|||| | ||| | | | ||||||||||| || |||| ||| | || || ||||
Sbjct 639 CAAGAAGATTGGAC-T-TC-GTAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATGG 695
Query 369 TCAGAAATCCGATTGGATAATGCACGAATA 398
|| ||| |||| ||||| |||||||||||
Sbjct 696 CCAAAAAACCGAATGGATCATGCACGAATA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5