BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332487
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62570.2 | Symbols: | Calmodulin binding protein-like | chr... 1528 0.0
> AT5G62570.2 | Symbols: | Calmodulin binding protein-like | chr5:25114934-25117295
FORWARD LENGTH=1813
Length=1813
Score = 1528 bits (827), Expect = 0.0
Identities = 924/972 (95%), Gaps = 2/972 (0%)
Strand=Plus/Plus
Query 1 ATGAGATTGCAAACTGTCAAACATTTTCTCGAACCCGTTCTCGAGCCATTGATTCGTAAA 60
|||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 55 ATGAGATTACAAACCGTCAAACATTTTCTCGAACCTGTTCTCGAGCCCTTAATTCGTAAA 114
Query 61 GTGGTCAAAGAAGAAGTTGAATTGGCTCTTGGAAAGCATCTAGCAGGCATCAAGTGGATT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 115 GTGGTCAAAGAAGAAGTTGAATTAGCTCTTGGAAAGCATCTAGCAGGCATCAAGTGGATT 174
Query 121 TGTGAGAAAGAGACTCATCCTTTGGAATCAAGGAATCTACAGTTAAAGTTCTTGAACAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGTGAGAAAGAGACTCATCCTTTGGAATCAAGGAATCTACAGTTAAAGTTCTTGAACAAT 234
Query 181 CTATCGCTTCCCTTGTTTACTTCAGCTCGAATAGAAGGAGCTGAAGGCCAAGCTATAAGA 240
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 235 CTATCGCTTCCCGTGTTTACTTCAGCTCGGATAGAAGGAGATGAAGGCCAAGCTATAAGA 294
Query 241 GTTGGATTAATTGACCCTTCAACTGGCCAAATTGTCTCTTCTGGTCCTGCATCATATGCG 300
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 295 GTTGGATTAATAGACCCTTCAACTGGCCAAATTTTCTCTTCTGGTCCTGCATCATCCGCC 354
Query 301 AAGCTCGAAATTTTTGTTGTTGAGGGTGATTTCGACAGTGATAGTGACTGGAC-AACTGA 359
|| |||||| ||||||| |||||||||||||| |||||| |||||| ||||| | |||
Sbjct 355 AAACTCGAAGTTTTTGTCGTTGAGGGTGATTTTAACAGTGTTAGTGATTGGACTGA-TGA 413
Query 360 GGATATCAGGAATAACATTGTAAGAGAGAGAGAAGGAAAGAAACCTCTACTCAATGGGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GGATATCAGGAATAACATTGTAAGAGAGAGAGAAGGAAAGAAACCTCTACTCAATGGGAA 473
Query 420 TGTATTTGCGGTTCTTAATGATGGCATCGGTGTTGTGGATGAAATTTCATTTACAGATAA 479
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 474 TGTATTTGCGGTTCTTAATGATGGCATTGGTGTTATGGATGAAATCTCATTTACAGATAA 533
Query 480 CTCTAGCTGGACTAGGAGCAGGAAGTTCAGACTTGGGGTACGGATGGTGGATCAATTTGA 539
||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 534 CTCTAGCTGGACTAGGAGCAGGAAGTTCAGACTCGGGGTACGAATAGTGGATCAGTTTGA 593
Query 540 TTTTGTCAAAATTAGAGAGGCAATAACAGAGTCCTTTGTCGTAAGAGATCATCGAGGAGA 599
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TTATGTCAAAATTAGAGAGGCAATAACAGAGTCCTTTGTCGTAAGAGATCATCGAGGAGA 653
Query 600 GTTGTACAAAAAGCATCATCCTCCTTCTCTTTTCGATGAAGTATGGAGATTGGAAAAGAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTGTACAAAAAGCATCATCCTCCTTCTCTTTTCGATGAAGTATGGAGATTGGAAAAGAT 713
Query 660 AGGAAAAGATGGAGCATTTCATAAACGACTGAATTGGTCAAATATAAACACTGTCAAGGA 719
||| ||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 714 AGGGAAAGATGGAGCATTTCACAGACGACTGAATTTGTCAAATATAAACACTGTCAAGGA 773
Query 720 TTTCCTCACACATTTCCATTTAAACTCTTCAAAACTCCGACAAGTTCTTGGTACGGGTAT 779
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTTCTTAACACATTTCCATTTAAACTCTTCAAAACTCCGACAAGTTCTTGGTACGGGTAT 833
Query 780 GTCTTCAAAGATGTGGGAAATTACGTTGGACCATGCTCGATCATGTGTTCTGGATAGTAG 839
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 834 GTCTTCAAAGATGTGGGAAATTACTTTGGACCATGCTCGATCATGTGTTCTAGATAGTAG 893
Query 840 CGTCCATGTTTACCAAGCTCCTGGATTTCAGAAGAAAACCGCTGTTGTCTTCAATGTTGT 899
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 894 CGTCCATGTGTACCAAGCTCCTGGATTTCAGAAGAAAACAGCTGTTGTCTTCAACGTCGT 953
Query 900 AGCTCAAGTACTTGGACTGTTCGTGGATTTTCAGTATATTCATGCTGAAAAGTTATCTGA 959
||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct 954 AGCTCAAGTGCTTGGACTGCTCGTGGATTTTCAGTATATTCCTGCTGAAAAGTTATCAGA 1013
Query 960 GATTGAAAAGGC 971
||||||||||||
Sbjct 1014 GATTGAAAAGGC 1025
Score = 641 bits (347), Expect = 0.0
Identities = 433/471 (92%), Gaps = 20/471 (4%)
Strand=Plus/Plus
Query 1002 GGCTCAAGCCGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTAATCTCGTA 1061
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GGCTCAAGCGGAGGTGATGGTAATTGATGCATTGAGTCACCTAAATGAAGTAATCTCGTA 1082
Query 1062 TGATGATGAGGTTTCCATGATGAGGAACGTTCTCAATGTCCCGGCTTTC-CAAACCAGTG 1120
|||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||
Sbjct 1083 TGATGATGAGGTTTCCATGATGAGGAACGTTCTCAATGCCCCGGC-TTCTCAAGGCAGTG 1141
Query 1121 --G-CGGGATTGATTATTCCGGTCTGAGTTTGACCAGTTTGGATGGCTACGGTTTTGTGT 1177
| ||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1142 TTGCCGGGATTGATTATTCGGGTCTGAGTTTGACCAGTTTGGACGGATACGGTTTTGTGT 1201
Query 1178 CTAA-TCTTCACAACACAGCAGAATGTAGTGGCCAGTACAGTAATGATG-T----T---- 1227
| || |||||||||||||||||||||||||||| || ||||| |||||| | |
Sbjct 1202 C-AAGTCTTCACAACACAGCAGAATGTAGTGGCAAGCACAGTGATGATGTTGACATGGAA 1260
Query 1228 GTTACTCCACATGGTTTATATGAAGACTACGACAATCTGTGGAATTGCTCTCAGATTCTA 1287
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 1261 GTTACTCCACATGGTTTATATGAAGACTACGACAATCTCTGGAACTGCTCTCACATTCTA 1320
Query 1288 GGCTTAGACGAACCGCAATCTGAGTTGCAGAGTGCGCTTGACGATTTCGTGTCACAGAAG 1347
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1321 GGCTTAGAAGAACCGCAATCTGAGTTGCAGAGTGCGCTTGACGATTTCATGTCACAGAAG 1380
Query 1348 AATGCTTCGGTC---GGTAAGGCTCACAGCAAAAGATGGACAAAGCTTTTCAGTGTCTCG 1404
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AATGCTTCGGTCGGTGGTAAGGCTCACAGCAAAAGATGGACAAAGCTTTTCAGTGTCTCG 1440
Query 1405 AAATGGCTATCTGTTTTCAAGTATGTCACAGTTAGGAAAAATATGAAATGA 1455
| |||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1441 AGATGGCTCTCTGTTTTCAAGTATGTCA-AGTTAGGAAAAATATAAAATGA 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5