BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332502
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62730.1 | Symbols: | Major facilitator superfamily protein... 2614 0.0
> AT5G62730.1 | Symbols: | Major facilitator superfamily protein
| chr5:25197494-25200033 FORWARD LENGTH=1770
Length=1770
Score = 2614 bits (1415), Expect = 0.0
Identities = 1607/1701 (94%), Gaps = 8/1701 (0%)
Strand=Plus/Plus
Query 1 ATGTCTC-AGACGTTTGAACAAATGGATGAAGCAAACAGGTTAAGCACGTGGAATGGTTA 59
||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 73 ATGTCTCTGGA-GTTTGAACAAATGGATGAAGCAAACAGGTTAAGCGCGTGGAATGGTTA 131
Query 60 TGTAGACTGGCGAAATAGACCGGCGTTGCGTAGCCGCCATGGCGGTATGCTTGCTGCCTC 119
||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 132 CGTAGACTGGCGAAGTAGACCTGCGTTGCGTGGCCGCCATGGCGGTATGCTTGCTGCCTC 191
Query 120 GTTCGTCTTGGTTGTGGAAGTGTTGGAGAACCTTGCGTTTTTAGCAAACGCGAGCAACCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GTTCGTCTTGGTTGTGGAAGTGTTGGAGAACCTTGCGTTTTTAGCAAACGCGAGCAACCT 251
Query 180 AGTGCTGTATTTGTCAACAAAGATGGGATTTTCGCCGTCGGGAGCCGCAAATGCAGTAAC 239
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 252 AGTGCTGTATTTGTCAACAAAGATGGGATTTTCGCCGTCCGGAGCCGCAAATGCCGTAAC 311
Query 240 CGCTTTTATGGGAACGGCGTTTTTCTTGGCCCTTCTCGGAGGTTTTTTGGCAGACGCCTT 299
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 312 CGCTTTTATGGGAACGGCATTTTTCTTGGCCCTTCTCGGAGGGTTTTTGGCAGACGCCTT 371
Query 300 CTTCACTACTTTCCATATCTATCTAGTCAGCGCCGCCATAGAATTCTTGGGCTT-AGTGG 358
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 372 CTTCACTACTTTCCATATCTATTTAGTCAGCGCCGCCATAGAATTCTTGGGCTTGA-TGG 430
Query 359 TACTAACGGTCCAAGCCCACGAGCACTCTACCGAGCCATGGTCTCGTGT-TGTTCTATTT 417
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 431 TACTGACGGTCCAAGCCCACGAGCACTCTACCGAGCCATGGTCTCGTGTAT-TTCTATTT 489
Query 418 GTGGGTCTATACTCAGTTGCTCTCGGTGTCGGAGGAATAAAAGGCTCGTTGCCACCGCAC 477
||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 490 GTGGGTCTATATTTAGTAGCTCTTGGTGTCGGAGGAATAAAAGGCTCGTTGCCACCGCAC 549
Query 478 GGAGCGGAACAGTTCGACGAAGAAACACCGAGTGGGAGGAGACAAAGATCCTTCTTCTTC 537
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 550 GGAGCGGAACAGTTCGACGAAGAAACATCGAGTGGGAGGAGACAAAGATCTTTCTTCTTT 609
Query 538 AACTACTTCATATTTAGCCTCTCGTGCGGTGCCTTGATAGCCGTCACGATCGTGGTCTGG 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 610 AACTACTTCATATTTAGCCTCTCGTGCGGTGCCTTGATAGCCGTCACGGTCGTGGTCTGG 669
Query 598 CTCGAAGACAACAAAGGCTGGTCTTATGGTTTCGGTGTCTCCACGGCCGCGATCTTGATC 657
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 670 CTCGAAGACAACAAAGGCTGGTCTTATGGCTTCGGTGTCTCCACAGCCGCGATCCTGATC 729
Query 658 TCGGTGCCGGTTTTCTTGGCCGGATCTCGCTTTTATCACCTCAAGGTTCCCAGTGGAAGT 717
||||| ||||||||||||||||| |||||| |||||| |||||||||||| |||||||||
Sbjct 730 TCGGTCCCGGTTTTCTTGGCCGGTTCTCGCGTTTATCGCCTCAAGGTTCCTAGTGGAAGT 789
Query 718 CCAATCACGACTCTATTCAAGGTCTTAACGGCTGCTTTCTACGCTAAGTATAAGAAAAGA 777
|||||||||||||| ||||| || ||||| |||||||| |||||||| ||||||||||||
Sbjct 790 CCAATCACGACTCTGTTCAAAGTGTTAACCGCTGCTTTATACGCTAAATATAAGAAAAGA 849
Query 778 AGAACTTCAAGAAACGTTGTCACTTGTCATACAAGAAGTGATTGTAATGACAACGTAACC 837
||||||||||||| ||||| || ||||| ||||||| ||||||| |||||| |||||||
Sbjct 850 AGAACTTCAAGAATTGTTGTAACGTGTCACACAAGAAATGATTGTGATGACAGCGTAACC 909
Query 838 AAGCAAAACTGCAACAGAGATGATGAATTTCTTGGATCTTTCCTAGGTGAAGTTGTGAGA 897
|| |||||||| || ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 910 AAACAAAACTGTGACGGAGATGATGGATTTCTCGGATCTTTCCTAGGTGAAGTTGTGAGA 969
Query 898 GAGCGTGAATCGATT-CCACGTCCACTCCGTTGCACTGAAGATCAAGCCAAAGATGTGAA 956
||||||||||| | | ||||||||||||||||| || ||||| |||| ||||||||||||
Sbjct 970 GAGCGTGAATC-ACTACCACGTCCACTCCGTTGTACGGAAGAGCAAGTCAAAGATGTGAA 1028
Query 957 GATAGTCATCAAGATCTTACCTATTTTTATGTCTACCATTATGCTTAATTGTTGTCTAGC 1016
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1029 GATAGTCATCAAGATCCTACCTATTTTCATGTCTACCATTATGCTTAACTGTTGTCTAGC 1088
Query 1017 TCAGCTCTCGACGTTTTCCGTCCAACAAGCTTCGACGATGAACACGAAGCTCGGGTCATT 1076
||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||| ||
Sbjct 1089 TCAGCTCTCGACGTTTTCCGTTCAACAAGCTTCCACAATGAACACAAAGCTCGGGTCCTT 1148
Query 1077 TACTGTCCCACCGGCGGCATTACCAGTCTTCCCGGTCGTCTTCATGATGATCTTAGCTCC 1136
|||||||||||| |||||||||||||| || || || |||||||||||||||||||||||
Sbjct 1149 TACTGTCCCACCCGCGGCATTACCAGTTTTTCCAGTGGTCTTCATGATGATCTTAGCTCC 1208
Query 1137 AACTTACAACCACCTCCTCCTCCCTCTAGCTAGAAAAACAACAAAAACCGAAACCGGCAT 1196
|| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1209 GACCTATAACCACCTCCTCCTCCCTCTAGCGAGAAAATCAACAAAAACCGAAACCGGCAT 1268
Query 1197 AACCCATCTTCAACGCATCGGCACAGGGTTAGTCCTTTCCATAGTAGCAATGGCGGTGGC 1256
|||||| |||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct 1269 AACCCACCTTCAACGCATCGGAACAGGGCTAGTCCTTTCCATAGTCGCAATGGCGGTGGC 1328
Query 1257 AGCCTTAGTGGAAACAAAACGCAAGCACGTCGTTGTTACTTGCTGCTCAAACAACAACTC 1316
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1329 AGCCTTAGTGGAAACAAAACGCAAGCACGTCGTTGTTAGTTGCTGCTCAAACAACAACTC 1388
Query 1317 ATCTTCTTATTCTTCTTCGCCGCTTCCTATAACGTTTCTTTGGGTGGCTATTCAATATGT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 ATCTTCTTATTCTTCTTCGCCGCTTCCTATAACGTTTCTTTGGGTGGCTATTCAATATGT 1448
Query 1377 GTTTCTTGGATCAGCAGATCTATTCACTCTAGCCGGTATGATGGAGTTTTTCTTCACCGA 1436
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 GTTTCTCGGATCAGCCGATCTATTCACTCTAGCCGGTATGATGGAGTTTTTCTTCACCGA 1508
Query 1437 AGCTCCTTCTTCGATGCGTTCCCTTGCAACCTCGCTCTCATGGGCGTCTCTTGCGATGGG 1496
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 AGCTCCTTCTACCATGCGTTCCCTTGCAACCTCGCTCTCATGGGCGTCTCTTGCGATGGG 1568
Query 1497 ATATTACTTGAGCTCTGTTCTCGTCTCGGCTGTTAATTTCGTAACAGGCTTAAACCATCA 1556
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 ATATTACTTTAGCTCTGTTCTCGTCTCGGCTGTTAATTTCGTAACAGGCTTAAACCATCA 1628
Query 1557 CAATCCATGGCTTCTAGGGAAGAATCTAAATCAGTACCACCTCGAGAGATTCTACTGGCT 1616
||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1629 CAATCCATGGCTTTTGGGGGAGAATCTAAATCAGTACCATCTCGAGAGATTCTACTGGCT 1688
Query 1617 CATGTGTGTGCTTAGTGGGATTAATTTCTTGCATTACCTCTTTTGGGCTAGTCGTTATGT 1676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1689 CATGTGTGTGCTTAGTGGGATTAATTTCTTGCATTATCTCTTTTGGGCTAGTCGTTATGT 1748
Query 1677 GTACCGGTCGAACCAAGGGTA 1697
|||||||||||||||||||||
Sbjct 1749 GTACCGGTCGAACCAAGGGTA 1769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5