BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332525
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63000.1 | Symbols: | Mitochondrial import inner membrane t... 950 0.0
> AT5G63000.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr5:25280012-25281537
REVERSE LENGTH=819
Length=819
Score = 950 bits (514), Expect = 0.0
Identities = 576/606 (95%), Gaps = 3/606 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCGGTAGAAAAACCCGAAGAAACTATCCCAGGGAATTCTTCAAGATTAGCTGGA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 75 ATGGAAGCGGTAGAAAAACCCGAAGAAACAATCCCAGGGAATTCTTCAAGATTAGCTGGA 134
Query 61 AATCCCAACTGGGGAACAGCAACTGTTGTTGGGGTCTTTGCAGGATTGTTATATGGAGGT 120
|||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 135 AATCCCAACTGGGGAACAGCAACTGTTGTTGGAGTATTTGCAGGATTGCTATATGGAGGG 194
Query 121 AGCAAAGAAGCTTCTGCTTCTGTGAGCAAGGATGCAGAAGTGATGTTGAAGATGGGTAGT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 195 AGCAAAGAAGCTTCTGCTTCTGTGAGCAAAGATGCAGAAGTGATGTTGAAGATGGGTAGT 254
Query 181 ACACAGGATAAGCGTGAACAACACAGATTGATGCGAGATGCAATGGAGAAAAGGTTCATC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 255 ACACAGGATAAGCGTGAACAACACAGGTTGATGCGAGATGCAATGGAGAAAAGGTTCATC 314
Query 241 CGAGTAACTCGTGGCTCTCTCATTGGAGGGATGCGCCTTGGAATGTTTACTGCCTCTTTC 300
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 315 CGAGTAACTCGTGGCTCCCTCATTGGAGGGATGCGTCTTGGAATGTTCACTGCTTCCTTC 374
Query 301 TTCAGTCTACAAAACTTTTTAGCTGAGACGCGAGGAGTTCATGATGTTTTCAATGTTGTT 360
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 375 TTTAGTCTACAAAACTTTTTAGCTGAGACCCGAGGAGTGCATGATGTTTTCAATGTGGTT 434
Query 361 GGAGCTGGTTCAGCTACTGCTGCAGTTTTTGGGCTAATCATGCCGGGGTCTCTTGCTTGG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 435 GGAGCTGGTTCAGCTACTGCTGCAGTTTTTGGCCTAATCATGCCGGGGTCTCTTGCTTGG 494
Query 421 CGTGCTCGGAATGTGTTGCTTGGTTCAGTTCTTGGAGCTACAGTCTGCTTCCCTCTTGGT 480
||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 495 CGTGCGCGGAATGTGTTGCTTGGTTCAGTTCTTGGAGCCACAGTGTGCTTCCCTCTTGGG 554
Query 481 TGGTTACAACTGAAGCTCATGAAGAAAGCAAACGAAGGAAATAACG---ACACAAGCCAC 537
||| |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 555 TGGGTACAACTGAAGCTCATGAAGAAAGCAAACGAAGGCAATAACGTTGACACAGGCCAC 614
Query 538 CACGGCGAGGTCACAAGTGGTGTTGGCGCAGCCATTGAGAGACTCGAACAACAGTTGAGA 597
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 615 CACGGTGAGGTCACGAGTGGTGTTGGTGCAGCCATTGAGAGACTCGAACAACAGTTGAGA 674
Query 598 AAATAA 603
||||||
Sbjct 675 AAATAA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5