BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332532
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63080.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 2034 0.0
> AT5G63080.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:25299935-25302444
REVERSE LENGTH=1603
Length=1603
Score = 2034 bits (1101), Expect = 0.0
Identities = 1290/1379 (94%), Gaps = 21/1379 (2%)
Strand=Plus/Plus
Query 1 ATGGGAATAGAGATTGTAGGTCAAATTGAGAGAGTCAATGGCAAAGAGTTGAGTTACGTC 60
||||||||| ||||| ||||||||||||||||| ||||||| |||||| ||||||||| |
Sbjct 124 ATGGGAATACAGATTATAGGTCAAATTGAGAGAATCAATGGTAAAGAGCTGAGTTACGGC 183
Query 61 GATTTTGCAGAGAAATACTTAGCCAAGAACCAGCCACTGGTCATCTCCAATCTCACTGAA 120
||||||||||||| ||||||||| |||||||||||| |||| || ||| |||||||||||
Sbjct 184 GATTTTGCAGAGAGATACTTAGCTAAGAACCAGCCAGTGGTAATATCCGATCTCACTGAA 243
Query 121 GATTGGCGAGCTCGGGAAGATTGGGTCAGTGAGAATGGACTCCCTAATCTCCACTTCTTT 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 244 GATTGGCGAGCTCGGGAAGATTGGGTCAGTGAGAATGGAAACCCTAATCTCCACGTATTT 303
Query 181 GCCACTCACTTCGGAAAATCCAGAGTTCAGGTTGCAGATTGTGATACAAGAGAATATACA 240
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 304 GCCACTCACTTTGGAAAATCCAGAGTTCAGGTTGCAGATTGTGATACGAGAGAATTTACA 363
Query 241 GATCAGAAAAGATTAGAAATGTCTGTTACTGAATTTGTGGAGCAATGGACTAAT----A- 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 364 GATCAGAAAAGATTAGAAATGTCTGTTACTGAATTTGTGGAGCAATGGACTAATAAGGAT 423
Query 296 ---A-T---GATTCTGTTTTGTATCTGAAAGATTGGCACTTTGTGAAGGAGTATCCAGAC 348
| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TCTATTGAGGAATCTGTTTTGTATCTGAAAGATTGGCACTTTGTGAAGGAGTATCCAGAC 483
Query 349 TATACAGCTTATCAAACGCCGCAACTGTTTTCTGATGATTGGCTTAACATATATCTAGAC 408
||||||||||| ||||| |||| ||||||||||||||||||||||| | |||||||||
Sbjct 484 TATACAGCTTACCAAACACCGCCGTTGTTTTCTGATGATTGGCTTAACGTGTATCTAGAC 543
Query 409 AGTTACCAAATGCATGAGGATAGAGATAATTTCCACAAGTATGATCAAATAAGCTGCTCT 468
| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 544 AATTACCAAATGCATGAGGATAGAGATAGTTTCCAGAAGTATGATCAAATAAGCTGCTCT 603
Query 469 GATTATCGTTTTGTTTATATGGGTGGAAAAGGATCTTGGACACCTCTACACGCTGATGTA 528
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 604 GATTATCGGTTTGTTTATATGGGTGGGAAAGGATCTTGGACACCTCTACATGCTGATGTA 663
Query 529 TTTAGATCTTATAGTTGGTCAGCTAATGTCTGTGGTaaaaaaaGATGGCTTTTTCTTCCT 588
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 664 TTTAGATCTTATAGTTGGTCAGCTAATGTCTGTGGTAAAAAAAGATGGCTTTTCCTTCCT 723
Query 589 CCTCTTCAAAGTCATCTTGTTTATGACAGGCAGGTGTACATGAAAAATTGCATTTATGAC 648
|||| |||||||||||||||||||| | || | |||||||||||||||| ||||||||
Sbjct 724 CCTCCTCAAAGTCATCTTGTTTATG--A--CA-G-GTACATGAAAAATTGCGTTTATGAC 777
Query 649 ATCTTTGAAGAGGTGAATGAAACTAAATTCCCTGGTTTTAAGAAGACCACCTGGCTTGAG 708
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATTTTTGAAGAGGTGAATGAAACTAAATTCCCTGGTTTTAAGAAGACCACCTGGCTTGAG 837
Query 709 TGCATTCAAGAACCCGGTGAAATTATATTTGTTCCGAGTGGATGGCATCATCAAGTATAT 768
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 838 TGCATTCAAGAACCCGGTGAAATTATCTTTGTTCCCAGTGGATGGCATCATCAAGTATAT 897
Query 769 AACTTGGAAGACACAATATCCATTAACCACAATTGGCTCAACGCATACAACCTATCTTGG 828
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 AACTTGGAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGG 957
Query 829 GTGTGGGATCTACTGTGGAAGGACTACAAGGACACTGAAGAGTCAATAGAAGACATAAGA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTGTGGGATCTACTGTGGAAGGACTACAAGGACACTGAAGAGTCAATAGAAGACATAAGA 1017
Query 889 GACATCTGTGATGATTTTGAAGCTATCTGCCAACGTAATCTTGCTGCCAACACAGGAATG 948
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GACATATGTGATGATTTTGAAGCTATCTGCCAACGTAATCTTGCTGCCAACACAGGAATG 1077
Query 949 AATTTGAATGACTTCTTCATCTTCATGTCACGGTTCTCTTTGGGGAACATGGTTGTACTG 1008
||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 AATTTAAATGATTTCTTCCTCTTCATGTCACGGTTCTCTTTGGGGAACATGGTTCTACTG 1137
Query 1009 CAATCTTACTCTGACAAACACAAAGCCCTGAATTCGTGTTCATCAGCAATGGCACAAAAT 1068
|||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 1138 CAATCTTACTCTGACAAACACAAAAACCTGAATTCGTGTTCATTAGCAATGGCCCAAAAC 1197
Query 1069 CTGTTATTGAATCTCTCAACTATAAGGAAAATCATGATGACGATGATATCTGCAGGCGGT 1128
|||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 1198 CTGTTAATGAATCTCTCAACTATACTGAAAGTCATGATGAAGATGATATCTGCAGGCGGT 1257
Query 1129 GTAACTTCAGAGGAAGTGTATATGGACTTGCGAAAAACACTGGAGGATCCACAGTTTCTC 1188
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1258 GTAACTGCAGAGGAAGTGTATCTGGACTTGCGAGAAACACTGGAGGATCCACAGTTTCTC 1317
Query 1189 AGATTGGTCAGAGACATGGGAAGAACTTATGCAATGATTCACATGGAGGAAGAGGATCAG 1248
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1318 AGATTTGTCAGAGACATGGGAAGAACTTATGCAAGGATTCACATGGAGGAAGAGGATCAG 1377
Query 1249 GTT-T--CTTCGGAAGAGTTATTACAAAAGCTCAGTGGTTTTGCAGATCCAAAGATGCAA 1305
|| | ||||| |||| ||||||||||||||||||||| |||||| |||||| ||||||
Sbjct 1378 TTTCTTTCTTCGAAAGAATTATTACAAAAGCTCAGTGGTCTTGCAGGTCCAAATATGCAA 1437
Query 1306 ATATGTTCTCCAAAGGATCTTGTTGAAATGATAAATCATCACAATACTTTTTTCTCCCA 1364
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1438 ATATGTTCTCCAAAGGATCTTGTTGAAATGATAAACCATCACAATACTTTTTCCTCCCA 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5