BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332533

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63087.1 | Symbols:  | Plant thionin family protein | chr5:2...   196    6e-50
  AT5G63063.1 | Symbols:  | Plant thionin family protein | chr5:2...  62.1    2e-09


> AT5G63087.1 | Symbols:  | Plant thionin family protein | chr5:25304803-25305198 
FORWARD LENGTH=298
Length=298

 Score =  196 bits (106),  Expect = 6e-50
 Identities = 171/199 (86%), Gaps = 17/199 (9%)
 Strand=Plus/Plus

Query  1    ATGGAGAACAAGTACAT-GAGTGTTGTGATGATTTTGGTTTTGGTGGTGATGGCTGCCAT  59
            ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  53   ATGGAGAACAAGTAC-TCGAGTGTTGTGATGATTTTGGTTTTGGTGGTGATGGCTGCCAT  111

Query  60   TGGAGGAGAAGCAGTGCCAGTAGATCCTTT-ATGTGAACAGAAATGTAGATCAGCCTGCC  118
            ||||||||||||| | | || |  || ||| |||||||||||||||||||||||| ||| 
Sbjct  112  TGGAGGAGAAGCA-T-C-AG-A--TC-TTTCATGTGAACAGAAATGTAGATCAGCATGC-  163

Query  119  GCAG-CGGCCACGGTTTCAGCAC-CCTTCCGGAGTGCTACACAGACTGTGTTCGAAG--G  174
            || | |||| | |||||| | || |||||||||||||||||  |||||||| ||||   |
Sbjct  164  GCTGGCGGCAAGGGTTTC-GTACACCTTCCGGAGTGCTACATTGACTGTGTACGAAAATG  222

Query  175  CAATG-CTTTCCACCTACG  192
            ||| | | |||||||||||
Sbjct  223  CAAGGACATTCCACCTACG  241


> AT5G63063.1 | Symbols:  | Plant thionin family protein | chr5:25297420-25297650 
FORWARD LENGTH=231
Length=231

 Score = 62.1 bits (33),  Expect = 2e-09
 Identities = 35/36 (97%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  37  GTTTTGGTGGTGATGGCTGCCATTGGAGGAGAAGCA  72
           ||||| ||||||||||||||||||||||||||||||
Sbjct  40  GTTTTTGTGGTGATGGCTGCCATTGGAGGAGAAGCA  75



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5