BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332543
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63170.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1559 0.0
> AT5G63170.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:25338699-25340096 REVERSE LENGTH=1017
Length=1017
Score = 1559 bits (844), Expect = 0.0
Identities = 963/1021 (94%), Gaps = 5/1021 (0%)
Strand=Plus/Plus
Query 1 ATGAATTCTCTAGCTATTCAAACTACAATAGTACTATTAGTTTCTGTTATATCAGTTTCC 60
||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 1 ATGAATTCTCTAGTTATTCAAACCACAATAG---TATTAGTCTCTGTTATATCAGTTTCT 57
Query 61 ATCGTTCGTGCTGGAAATATTCCCGCGGTTATAGCGTTCGGAGATTCGATACTCGATACC 120
||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 58 ATCGTTCATGCCGGAAATATTCCCGCGGTTATAGCGTTCGGAGATTCAATTCTCGATACA 117
Query 121 GGAAACAACAATTATCTTATGACTCTTACTAAGGTTAACTTCTATCCGTATGGAAGAGAT 180
|| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 118 GGCAACAACAATTATCTCATGACTCTAACTAAGGTTAATTTCTATCCCTATGGAAGAGAT 177
Query 181 TTTGTAACTCAAAGAGCCACAGGAAGATTTGGCAATGGAAGAATTCCTACAGATTTGATT 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTTGTAACTCGAAGAGCCACAGGAAGATTTGGCAATGGAAGAATTCCTACAGATTTGATT 237
Query 241 GCCGAAGGTTTGGGAATAAAGAATATTGTACCAGCTTATCGTAGTCCATTCCTTCAACCC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 GCCGAAGGTTTGGGAATAAAGAATATTGTACCAGCTTATCGTAGTCCATTCCTTGAACCC 297
Query 301 AATGATATCCTAACCGGTGTTAGTTTTGCTTCTGGTGGTTCCGGTTTAGATCCTATGACC 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 AATGATATCTTAACCGGTGTTAGTTTTGCTTCTGGTGGTTCCGGTTTAGATCCAATGACC 357
Query 361 GCCAGAATTCAGGGAGTTATTTGGGTACCAGACCAGTTAAACGACTTCAAAGCTTACATA 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GCCAGAATTCAGGGAGTTATTTGGGTACCAGACCAGTTAAATGACTTCAAAGCTTACATA 417
Query 421 GCAAAGCTAAACAGCATTACAGGAGATGAAGAGAAAACAAGATCAATCATATCGAATGCA 480
|||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 GCAAAGCTGAATAGCATCACAGGAGACGAAGAGAAAACAAGATCAATCATATCGAATGCA 477
Query 481 GTTTTTGTCATTTCCGCTGGAAATAACGATATTGCCATCACATATTTCACAAATCC-AGC 539
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 478 GTTTTTGTCATTTCCGCTGGGAATAACGATATTGCCATCACATATTTCACAAATCCGAT- 536
Query 540 AAGAAACACTCGATACACTATCTTCTCATACACGGACATGATGGTTTCATGGACTCAATC 599
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 537 AAGAAACACTCGATACACTATCTTTTCATACACTGACTTGATGGTTTCATGGACTCAATC 596
Query 600 ATTCATAAAGGAATTATATAATTTGGGAGCGAGAAAATTCGCGATTATGGGAACATTACC 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 597 ATTCATAAAGGAATTATATAATTTGGGAGCAAGAAAATTCGCGATTATGGGAACATTACC 656
Query 660 ATTGGGTTGCTTACCAGGAGCAAGCAACGCTCTTGGAGGGTTATGTCTAGAACCTGCAAA 719
|||||||||||| || ||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 657 ATTGGGTTGCTTGCCGGGAGCAAGCAATGCTCTTGGAGGTTTATGTCTAGAACCCGCAAA 716
Query 720 TGTAGTGGCTAGACTCTTTAACCGGAAGCTAGCGAACGAAGTCAACAACCTCAACTCGAT 779
| |||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||
Sbjct 717 CGCAGTGGCTAGACTCTTTAATAGGAAGTTAGCGGATGAAGTCAACAACCTCAACTCGAT 776
Query 780 GCTGTCAGGTTCTCGTTCGATATACGTCGACATGTATAATCCTCTTCTTGAACTCGTCAA 839
||| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 777 GCTCCCAGGTTCTCGTTCGATATACGTCGACATGTATAATCCTCTCCTCGAACTTGTCAA 836
Query 840 AAATCCTCTAAGATCAGGATTTACCTCGCCAACTAGACCTTGTTGTTGTGCTCCGGCGGC 899
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 AAACCCTCTAAGATCAGGATTTATCTCGCCAACTAGACCTTGTTGTTGTGCTCCGGCGGC 896
Query 900 TCCGATACCGTGCTTGGATGCGTCTCGTTATGTCTTTTGGGACATTGGACATCCATCGGA 959
||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 897 TCCCATACCGTGCTTGGATGCGTCTCGTTATGTGTTTTGGGACATTGCACATCCATCGGA 956
Query 960 GAAAGCTTATCAGACTATTATTCCTCCGATTATCCAACAAATCCAACAAAGCTTCGCTTG 1019
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 GAAAGCTTATCAGACAATTATTCCTCCGATTATCCAACAAATTCAACAAAGCTTCGCTTG 1016
Query 1020 A 1020
|
Sbjct 1017 A 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5