BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332548
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63225.1 | Symbols: | Carbohydrate-binding X8 domain superf... 401 3e-111
AT5G63230.1 | Symbols: | Carbohydrate-binding X8 domain superf... 370 8e-102
> AT5G63225.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:25356133-25356740 REVERSE LENGTH=608
Length=608
Score = 401 bits (217), Expect = 3e-111
Identities = 255/273 (93%), Gaps = 4/273 (1%)
Strand=Plus/Plus
Query 267 TAGCAGACAATGGTGCATGGCCATGCCGACTGCAAGAG-ACGAACAATTACAAGCTAATA 325
||||||||||||||||||||||||||||| ||| | || | |||||||||||||||||||
Sbjct 120 TAGCAGACAATGGTGCATGGCCATGCCGAATGCCACAGGA-GAACAATTACAAGCTAATA 178
Query 326 TTGATTTTGCTTGTAGCCAGAATGTTGACTGTACACCGATCCAACCTGGTGGAACTTGCT 385
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 179 TTGATTATGCTTGTAGCCAGAATGTTGATTGTACACCGATCCAACCAGGTGGAACTTGCT 238
Query 386 ATGACCCTAACACGTTATTCA-ACCATGCGTCGTTTGCCATGAACGCTTATTATCAAAGC 444
|||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 239 ATGAACCTAACACGTTATT-AGACCATGCGTCGTTTGCCATGAACGCATATTATCAAAGC 297
Query 445 CATGGTCGTACCGAAGATGCTTGTAGGTTCGACCGTACCGGTTGTTTTGTTTTTATCGAC 504
|||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 298 CATGGTCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGGTTGTTTTGTTTTCATCGAC 357
Query 505 CCAAGTAATGGCTCATGTGTCTACTACACTTAA 537
||||||||||| |||||| ||||||||||||||
Sbjct 358 CCAAGTAATGGTTCATGTATCTACTACACTTAA 390
> AT5G63230.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:25357360-25357822 REVERSE LENGTH=463
Length=463
Score = 370 bits (200), Expect = 8e-102
Identities = 247/270 (91%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTTGCAACTTTTAACACTTCTTCTTCTCGTATCAACTGTCGCTATCCCCGTC 60
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 15 ATGTCGTCGTTGCAACTTTTAACACTTCTTCTTCTCATATCAACTGTCTCTATCCCCGTC 74
Query 61 GTGACTTGCAGACAATGGTGCATGGCGATGCCTGGTACCTCAGATGAGCAGTTACAAGCC 120
|||||||||||||||||||| | | | |||||| |||||||||||||||||||||||||
Sbjct 75 GTGACTTGCAGACAATGGTGTACGCCAATGCCTAATACCTCAGATGAGCAGTTACAAGCC 134
Query 121 AACATTGATTTTGGTTGCAGCAACGGCGTCGATTGTACACCGATCCAACCTGGTGG-AAC 179
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 135 AACATTGATTTTGCTTGCAGCAACGGCGTCGATTGTACACCGATCCAACCCGGTGGGAA- 193
Query 180 TTGCTATGACCCTAACACGTTATTCGACCATGCGTCGTATGTCATGAACGCTTATTATCA 239
||| || ||||||| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 194 TTGTTACAACCCTAATACTTTATTTGACCATGCATCGTATGTCATGAACGCTTATTATCA 253
Query 240 AAGCCATGGGCGTATCGAAGATGCTTGTAG 269
|||||||| ||| |||||||||| |||||
Sbjct 254 TAGCCATGGCCGTGTCGAAGATGCGTGTAG 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25719883264
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5