BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332561
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63390.1 | Symbols: | O-fucosyltransferase family protein |... 2682 0.0
AT1G80500.1 | Symbols: | SNARE-like superfamily protein | chr1... 191 2e-47
> AT5G63390.1 | Symbols: | O-fucosyltransferase family protein
| chr5:25390512-25392591 REVERSE LENGTH=1680
Length=1680
Score = 2682 bits (1452), Expect = 0.0
Identities = 1606/1682 (95%), Gaps = 4/1682 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAGTCGATGAGAACTATCAAAAatccattcttcacttcgcatccgccatctcct 60
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGCGAAATCGATGAGAACTATCAAAAATCCATTCTTTACTTCGCATCCGCCATCTCCA 60
Query 61 ttcttccatctctctctgctcttcttctctcCACTGAAGAAATCCAGTCCCCGATACCTA 120
||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 61 TTCTTCCATCTCTCTCTCCTCTTCTTCACTCCCCTGAAGAAATCAAGTCCCCGATACCTA 120
Query 121 AACCACCATCACCAAACTCGATGCCCACCTCCACAGTATCCCcttcttctcatttcactt 180
||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||
Sbjct 121 AACCACCATCACCAAACTCGATGCCCACCTCCACAGTTTTTCCTTCTTCTCATCTCTCTT 180
Query 181 tctctcgttttctcgggaatttcgtttctcacattttctttAAACCCTGAATCGTCAACT 240
||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||
Sbjct 181 TCTCTCGTTTTCTCGGGAATTTCATTTCTCACATTTTCTTTAGACACTGGATCGTCAACT 240
Query 241 TGCGTCTCCACATCTT-CGACTTCCTCTCTCAAATTCTTAATCTCCGACGTCGACCACCG 299
|||||||||||||||| || ||||||||||||||||||| |||||||| ||||| |||||
Sbjct 241 TGCGTCTCCACATCTTCCG-CTTCCTCTCTCAAATTCTTCATCTCCGATGTCGATCACCG 299
Query 300 TCAGATCTTAACCTCCCTCGCTGTCTCCGGAGCTTCCACATTGTTTCCGTTACCGACGAG 359
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 300 TCAGATCTTAACCTCCCTTGCTGTATCCGGAGCTTCCACGTTGTTTCCGTTACCGGCGAG 359
Query 360 AGGAGGACATTCCGGGAATATGACGGAGGAAGAGAGAGAGTTTTGGAAACAACCCAATGG 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 AGGAGGACATTCCGGGAATATGACGGAGGAAGAGAAAGAGTTTTGGAAACAACCCAATGG 419
Query 420 TGAAGGATACAAGCCTTGTTTGGATTTTAGTTTGGATTACAGGAAGAAATCAGTTAGGGT 479
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||
Sbjct 420 TGAAGGATACAAGCCTTGTTTGGATTTTAGTTTGGAGTACAAGAAGAAATCAGCTAGTGT 479
Query 480 TTCTAAAGAGAAGAAACGATTCCTTGTTGTTGTTGTCTCTGGTGGACTTAATCAACAACG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCTAAAGAGAAGAAACGATTCCTTGTTGTTGTTGTCTCTGGTGGACTTAATCAACAACG 539
Query 540 GAATCAAATCGTTGATGCTGTTGTAATCGCTATGATTCTTGAAGCTGCTCTTGTTGTTCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAATCAAATCGTTGATGCTGTTGTAATCGCTATGATTCTTGAAGCTGCTCTTGTTGTTCC 599
Query 600 TGTTTTGCAGGTGAATCGAGTCTGGGGAGACGAAAGTGAGTTCTCTGA-CATTTTCGATG 658
||||||||| ||||||||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 600 TGTTTTGCAAGTGAATCGAGTCTGGGGAGACGAAAGTGAATTCTCAGATC-TTTTCGATG 658
Query 659 TAGAGCATTTCAAGAAAACGCTGAGATCTGATGTGCGTATCGTTTCTTCTCTACCGTCAA 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 TAGAGCATTTCAAGAAAACGCTGAGATCTGATGTTCGTATCGTTTCTTCTCTACCGTCAA 718
Query 719 CGCATCTTATGTCTAGACAAACAATTGAGAATCAGATTCCTTGGGATGTTTCTCCGGTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGCATCTTATGTCTAGACAAACAATTGAGAATCAGATTCCTTGGGATGTTTCTCCGGTTT 778
Query 779 GGATCCGTGCTAAATACTTCAAACAGTTGAATGAGGAAGGACTTTTGGTGTTGAAAGGAT 838
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 GGATCCGTGCTAAATACTTCAAGCAGTTGAATGAGGAAGGACTTTTGGTGTTGAAAGGAT 838
Query 839 TAGACTCAAAGTTAGCCAAGAATCTCCCGCCGGATCTTCAGAAGCTTCGATGCAAGGTTG 898
| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 839 TGGACTCAAAGTTAGCCAAGAATCTACCGCCGGATCTGCAGAAACTTCGATGCAAGGTTG 898
Query 899 CTTTCCATGCACTGAGATTCGCAGCACCGATTGAGAATCTCGGGAACAAACTCGCGAGAA 958
|||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 899 CTTTCCATGCACTGAGATTCGCGGCACCAATTGAGAATCTCGGGAACAAACTCACGAGAA 958
Query 959 GAATGTGGATAGAAGGTCCATATATAGCTCTCCATTTAAGGCTAGAGAAAGATGTATGGG 1018
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 959 GAATGTGGATAGAAGGTCCATATATTGCTCTCCATTTAAGGCTAGAGAAAGATGTTTGGG 1018
Query 1019 TAAGAACTGGTTGTCTCACTGGATTAGGCTCAGAATTTGATAGGATCATAGCAGAAACCA 1078
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1019 TAAGAACCGGTTGTCTCACTGGATTAGGCTCAGAATTCGATCGGATCATAGCAGAAACCA 1078
Query 1079 GGACATCTCAGCCTCGATACCTTACTGGTAGACTAAACATGAGCTATACAGAGCGTAGAC 1138
| || ||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1079 GAACGTCTCAGCCTCGATACCTCACTGGTAGACTAAACTTGACCTATACAGAGCGTAGAC 1138
Query 1139 TTGCTGGTTTTTGTCCTCTCAATGCATATGAGATTGCAAGGTTGTTGAAGGCCTTGGGAG 1198
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1139 TTGCTGGTTTTTGTCCTCTCAATGTATATGAGATTGCAAGGTTGTTGAAGGCTTTGGGAG 1198
Query 1199 CACCTAGGAATGCATCGATATATATTGCAGGAGGTGAGCCATTTGGTGGCTCACGAACAT 1258
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1199 CACCTAGTAATGCGTCGATATATATTGCAGGAGGTGAACCATTTGGTGGCTCACGAGCAT 1258
Query 1259 TAGAGCCTCTCTCTAAAGAGTTCTCTAATTTGGTGACAAAGGGGACACTGGCTCATAAAG 1318
||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1259 TAGAGCCTCTCGCTAAAGAGTTCTCTAATTTGGTGACAAAGGAGACATTGGCTCATAAAG 1318
Query 1319 GCGAGCTCTTGCCTTACACCAATAGATCTTCAGCTTTAGCTGCTATTGACTACATTGTAT 1378
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1319 GCGAGCTCTTGCCTTACACCAATAGATCTTCAGCTTTAGCAGCTATTGACTACATTGTAT 1378
Query 1379 CACTTAGCAGCGATGTTTTTCTTCCTTCCCATGGTGGAAACATGGCAAAAGCTATGCAGG 1438
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CACTTAGCAGCGATGTTTTTATTCCTTCCCATGGTGGAAACATGGCAAAAGCTATGCAGG 1438
Query 1439 GAAACAGAGCTTATGTAGGACACAGGAAGTTTATAATGCCTAATAAGAGAGCAATGCTTC 1498
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1439 GAAATAGAGCTTATGTAGGACACAGGAAGTTTATAATGCCTAATAAGAGAGCGATGCTTC 1498
Query 1499 CTTTAATGGAGAATTCTTCAGTTTCAGATGCCGAGCTCAGTTCTGTAACTCGGAAGCTTC 1558
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 1499 CTTTAATGGAGAATTCTTCTGTTTCAGATGCCGAGCTCAGTTTTCTAACTCGGAAGCTTC 1558
Query 1559 ACCGTAAGTCCCAAGGCCATCCTGAGTCACGGAGAGGGCGGAGAGATCGTGACGTGATAG 1618
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ACCGTAAGTCCCAAGGCTATCCTGAGTCACGGAGAGGGCGGAGAGATCGTGACGTGATAG 1618
Query 1619 CTTATCCCGTCCCGGAGTGTATGTGCCGCCATGGAAAACACAGGTCTGTAGGTCTCTTCT 1678
||||||| ||||||||||||||||| || ||| |||||||||||||||||||| ||||||
Sbjct 1619 CTTATCCTGTCCCGGAGTGTATGTGTCGACATAGAAAACACAGGTCTGTAGGTTTCTTCT 1678
Query 1679 AG 1680
||
Sbjct 1679 AG 1680
> AT1G80500.1 | Symbols: | SNARE-like superfamily protein | chr1:30270529-30272668
FORWARD LENGTH=898
Length=898
Score = 191 bits (103), Expect = 2e-47
Identities = 128/139 (92%), Gaps = 6/139 (4%)
Strand=Plus/Minus
Query 670 AAG-AAAACGCTGAG-ATCTGATGTGCGTATCGTTTCTTCTCTACCGTCAACGCATCTTA 727
||| ||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 198 AAGTAAAACCCTGTGAATCTGATGTGCGTATCGTTTCTTCTTTACCATCAACGCATCTTA 139
Query 728 TGTCTAGACAAACAATT-GAGAATCAGATTCCTTGGGATGTTTCTCCG-GTTTGGATCCG 785
||||||||||||| ||| ||||||||||||||||||||||| ||| || |||||||||||
Sbjct 138 TGTCTAGACAAAC-ATTGGAGAATCAGATTCCTTGGGATGTCTCT-CGTGTTTGGATCCG 81
Query 786 TGCTAAATACTTCAAACAG 804
|||||||||||||||||||
Sbjct 80 TGCTAAATACTTCAAACAG 62
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5