BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332565
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63440.2 | Symbols: | Protein of unknown function (DUF167) ... 1175 0.0
> AT5G63440.2 | Symbols: | Protein of unknown function (DUF167)
| chr5:25406302-25408420 FORWARD LENGTH=982
Length=982
Score = 1175 bits (636), Expect = 0.0
Identities = 678/699 (97%), Gaps = 0/699 (0%)
Strand=Plus/Plus
Query 1 ATGCCGAAGAGAACGACGCACACGTACTCGAGCGAGGACGCGGCGCCGGATGGACCCGAC 60
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 ATGCCGAAGAGAACGACACACACGTACTCGAGCGAGGACGCCGCGCCGGATGGACCCGAC 118
Query 61 TCTGATCTCTTCGTTTACTACTGCAAGCACTGTGGTTCTCATGTCCTTATCACCGATACC 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 119 TCTGATCTCTTCGTATACTACTGCAAACACTGTGGTTCTCATGTCCTTATCACTGATACC 178
Query 121 CAGTTGCAGAAGATGCCAAAAAGGAAGACCGACAGATCTAATGTACTTGACAAGAAGAAG 180
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 179 CAGTTGCAGAAGATGCCAAAAAGGAAGACCGACAGGTCGAATGTACTTGACAAGAAGACG 238
Query 181 CACCTTGCTAGGTTGAATGTCAGCGAGGGAGGAAAAGTTCTATTGAAACGTGGCGAAGGA 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 CACCTTGCTAGGTTGAATGTCAGCGAGGGAGGAAAAGTTTTATTGAAACGTGGCGAAGGA 298
Query 241 AAAATGGAGAGACAATTTAGAATGAACTGTATCGGTTGTGAGCTTTTTGTTTGTTATCGT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAAATGGAGAGACAGTTTAGAATGAACTGTATCGGTTGTGAGCTTTTTGTTTGTTATCGT 358
Query 301 GCTGAAGAGAATCTGGAAACAGCGTCTTTCATTTACATTGTTGATGGAGCACTTAGTGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCTGAAGAGAATCTGGAAACAGCGTCTTTCATTTACATTGTTGATGGAGCACTTAGTGCT 418
Query 361 GTTGCTGCAGAAACTAACCCACAGGATGCACCTGTACCTCCCTGCATTTCCCAACTCGAC 420
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 419 GTTGCTGCAGAAACCAACCCACAGGATGCACCAGTACCTCCCTGCATTTCACAACTCGAC 478
Query 421 GGTGGACTTGTTCAGGTTGCAATAGAAGTGGAAGACCGTGCACAACGCTCAGCAATCACA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 GGTGGACTTGTTCAGGTTGCAATAGAAGTGGAAGACCGTGCACAACGTTCAGCAATCACA 538
Query 481 AGGGTAAATGCTGATGATGTTCGTGTCACTGTTGCCGCACCAGCAGCTCGTGGGGAAGCT 540
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 539 AGGGTAAATGCTGATGATGTTCGTGTGACTGTTGCTGCACCAGCAGCCCGTGGGGAAGCT 598
Query 541 AACAACGAGCTTCTGGAATTCATGGGCAGGGTTCTTGGTTTAAGGTTGAGCCAGATGACT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 AACAACGAGCTTCTGGAATTCATGGGAAGGGTTCTTGGTTTAAGGTTGAGCCAGATGACT 658
Query 601 CTCCAAAGAGGTTGGAATAGCAAATCAAAACTCCTCGTGGTCGAGGATTTATCTGCTAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 CTCCAAAGAGGTTGGAATAGCAAATCAAAACTCCTCGTGGTCGAGGATTTATCAGCTAGA 718
Query 661 CAAGTGTATGAGAAGCTTCTTGAGGCTGTTGTACCGTAA 699
|||||||||||||||||||| ||||| ||||||||||||
Sbjct 719 CAAGTGTATGAGAAGCTTCTCGAGGCCGTTGTACCGTAA 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5