BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332577
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63550.2 | Symbols: | DEK domain-containing chromatin assoc... 2372 0.0
AT3G48710.1 | Symbols: | DEK domain-containing chromatin assoc... 638 0.0
> AT5G63550.2 | Symbols: | DEK domain-containing chromatin associated
protein | chr5:25444672-25448172 FORWARD LENGTH=1967
Length=1967
Score = 2372 bits (1284), Expect = 0.0
Identities = 1500/1602 (94%), Gaps = 24/1602 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTGAAACCCTAGAAGAGAAGATACCGGAAGTGAATTCTCCGGCGAAGGATGTT 60
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct 134 ATGGCGACTGAAACCCTAGATGAGAAGACACCGGAAGTGAATTCTCCGGCGAAGGAGGAA 193
Query 61 GGTGATGCTGCTGCGAAGGAGGAGGTGGAGATAGagaaagaaaaagcggattcgccgaga 120
||||| || | ||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct 194 ATTGATGTTGTTCCGAAGGAGGAGAAGGAGGTAGAGAAAGAAAAAGTGGATTCGCCGAGA 253
Query 121 attgaagaagcggaggaggagaagaaggaagatgaagaagagggtgaagcgaaagaagga 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ATTGGCGAAGCGGAGGAGGAGAAGAAGGAAGATGAAGAAGAGGGTGAAGCGAAAGAAGGA 313
Query 181 gaattggag-gagaaagataaagaagacgatgtcgaaagtgaggaggaggaagaagaaga 239
||||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 314 GAATTGG-GTGAGAAAGATAAAGAAGACGATGTAGAAAGTGAGGAGGAAGAAGAAGAAGA 372
Query 240 agaaggaagtggaagtaagaaatcgtcggagaaggaagCGGTGACTCCGACTAGTGAGAG 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 373 AGAAGGAAGTGGAAGTAAGAAATCGTCGGAGAAGGAAACGGTGACTCCGACTAGTGAGAG 432
Query 300 ACCAACGAGGGAGAGAAAGAAAGTTGAGCGTTTCTCGTTGTCGACTCCTATGCGGGCTAC 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 433 ACCAACGAGGGAGAGAAAGAAGGTTGAGCGTTTCTCGTTGTCGACTCCTATGCGGGCTCC 492
Query 360 ACCAAGCAAGTCCGTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAA 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 ACCGAGCAAGTCCGTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAA 552
Query 420 TGTGGCTCATAAACTATCCAAGAGGAAAGCTGATGACAACCTGATGTTACTACACACCAT 479
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 553 TGTGGCTCATAAACTATCGAAGAGAAAAGCTGATGACAACCTGATGTTACTACACACCAT 612
Query 480 TCTTTATGGGAAGAAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TCTTTTTGGGAAGAAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGG 672
Query 540 CTTTGCATGGTCAGAGAATGAGGAGGAGAAGCAGAGAGCACGCATAAAAGAGAAGATTGA 599
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 673 CTTTGCCTGGTCAGAGAAAGAGGAGGAGAAGCAGAGAGCACGAATAAAAGAGAAGATTGA 732
Query 600 CAAATGCATAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATACCTATAAGTAG 659
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 733 CAAATGCGTAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATCCCTATAAGCAG 792
Query 660 AAGTAACATGAAAAAAGAAGAACTTGCTGTCAAAGTGCTTGAATTTTTGGAATCTCCCAA 719
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 793 AAGTAACGTGAAAAAAGAAGAACTAGCTGTCAAAGTGCTTGAATTTTTGGAATCTCCCAA 852
Query 720 GGAAACAAGAGATGTTGTAATTGCTGATCAAGAAAAGCAGGCGAAAAAGCGCAAGAGTAC 779
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GGAAACTAGAGATGTTATAATTGCTGATCAAGAAAAGCAGGCGAAAAAGCGCAAGAGTAC 912
Query 780 AC-AAAGAAGGGGGAAATCTGGAGAATCTTCGGACACCCCAGCCAAGAGGAAAAGGCAAA 838
|| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 913 ACCAAA-AAGGGGGAAATCTGGAGAATCTTCGGACACCCCTGCCAAGAGGAAAAGGCAAA 971
Query 839 CAAAAAAGAGAGATCAGCCATCTGACACTGAAGAGGGCAAGGATGAAGGAGATGCTGATT 898
| |||||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 972 CTAAAAAGCGAGATCTTCCATCTGACACGGAAGAAGGCAAGGATGAGGGAGATGCTGACT 1031
Query 899 CTGAAGGAACTAATGATCCTCATGAAGAAGATGAGGCAACTCCAGAGGAAGAAAGTGACC 958
|||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1032 CTGAAGGAACTAATGATCCTCATGAAGAAGATGATGCAGCGCCAGAGGAAGAAAGTGACC 1091
Query 959 ATGAAAAGACTGACACTGAAGATGAAAAAGACAAAGCT-GAGGTTGAGAAACCATCCAAT 1017
||||||||||||||||||| ||||| ||||| ||| | ||||||||||||||||||||
Sbjct 1092 ATGAAAAGACTGACACTGACGATGAGAAAGATGAAG-TAGAGGTTGAGAAACCATCCAAG 1150
Query 1018 AAGAAAAGATCATCGAAAAAGACTGTAGAGGAGAGCTCAGGGTCCAAAGGTAAGGATAAG 1077
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1151 AAGAAAAGCTCATCGAAAAAGACTGTAGAGGAGAGTTCAGGGTCCAAAGGTAAGGATAAG 1210
Query 1078 CAAGCTTCTGCCAAAGGTTCTGCAAAATCTGGTGAAAAGTTCTCCAAACAAATTGCTAAG 1137
||| ||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1211 CAACCTTCTGCCAAAGGTTCTGCAAGATCTGGGGAAAAGTCCTCCAAACAAATTGCTAAG 1270
Query 1138 TCAACTTCATCCCCAGCTAAGAAGCAAAAAGTTGATCATGTCGAGTCTTCTAAAGAGAAA 1197
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1271 TCAACTTCATCCCCAGCTAAGAAGCAAAAAGTTGATCACGTTGAGTCTTCTAAAGAGAAA 1330
Query 1198 AGCAAGAAACAGCCGAGTAAGCCACAGGCTAAGGCATCTAAAGAGAAAGGTAAAGCCACT 1257
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1331 AGCAAGAAACAGCCGAGTAAGCCACAGGCTAAGGGATCTAAAGAGAAAGGAAAAGCCACT 1390
Query 1258 AAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAGAAGAGATGCTTGAAGTGGTGTCCAAA 1317
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1391 AAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAAAAGAGATGCTTGAAGTGGTGTCCAAA 1450
Query 1318 ATTCTGAAGGAAGTAGACTTCAATACGGCTACACTGTCAGATATTCTGCAGAAGCTAAGC 1377
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1451 ATTCTGAAGGAAGTAGACTTCAATACGGCAACACTATCAGATATTCTGCAGAAGCTAAGT 1510
Query 1378 GACCATTTTGGTGTCGAACTGTCGCATAGAAAACCAGAGGTGAAGGATGTTATCACAGAT 1437
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 GACCATTTTGGTGTCGAGCTGTCGCATAGAAAACCAGAGGTGAAGGATGTTATCACAGAG 1570
Query 1438 GCCATAAATGCAATGACTGATGACgaagatgatgaagaagaagacgaagaggaaaaagcc 1497
||||||||||||||||||||||| ||| | |||||||| ||||||||| ||||
Sbjct 1571 GCCATAAATGCAATGACTGATGA------TGA--A-GAAGAAGATGAAGAGGAAGAAGCT 1621
Query 1498 aaggctggaagtgacaaagtgaaggaagaaggagaagaagaagaagaagaagaagaagag 1557
|||| ||||||||||||| |||||||||| | || | | || || | |||||||||
Sbjct 1622 GAGGCAGGAAGTGACAAAGAAAAGGAAGAAGTA-AA-A-G--GA-GA-G--GAAGAAGAG 1672
Query 1558 gaaacagctgaggctgaaagtgacaaagagaaggaagaagaa 1599
|||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1673 GAAAAAGCTGAGGCTGAAAGTGACAAAGAGAAGGAAAAAGAA 1714
> AT3G48710.1 | Symbols: | DEK domain-containing chromatin associated
protein | chr3:18040937-18044226 FORWARD LENGTH=1707
Length=1707
Score = 638 bits (345), Expect = 0.0
Identities = 901/1156 (78%), Gaps = 91/1156 (8%)
Strand=Plus/Plus
Query 376 TCAATTGA-AAAGGGTCGTGGAACAC--CTCTCAGAGAAATTCCAAATGTGGCTCATAAA 432
|||||| | | ||||||||||||||| || | || |||||||||||||| ||| |||||
Sbjct 343 TCAATT-ACACAGGGTCGTGGAACACGGCT-TAAG-GAAATTCCAAATGTTGCTTATAAA 399
Query 433 CTATCCAAGAGGAAAGCTGATGACAACCTGATGTTACTACACACCATTCTTTATGGGAAG 492
|| |||||||| ||| ||||||||||||| | ||||| |||||||||||||| || ||
Sbjct 400 CTGTCCAAGAGAAAACCTGATGACAACCTCTTCTTACTTCACACCATTCTTTACGGCAAA 459
Query 493 AAAGCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGGCTTTGCATGGTCA 552
|||||||||||||||||| | |||| |||||||||||| ||||| || |||| |||||||
Sbjct 460 AAAGCAAAGGCACAGATGCTAAAGAAAAACATTGGTCAGTTTTCGGGTTTTGTATGGTCA 519
Query 553 GAG-AATGAGGAGGAGAAGCAGAGAGC--ACGCATAAAAGAGAAGATTGACAAATGCATA 609
||| || |||||||||||||| ||||| | || | ||||||||| |||| ||||| ||
Sbjct 520 GAGCAA-GAGGAGGAGAAGCAAAGAGCAAAAGC-T-AAAGAGAAGCTTGATAAATGTATC 576
Query 610 AAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATACCTA-TAAGTAGAAGTAAC-A 667
|||||||| ||||||| ||| |||||||||||||||||||| | ||| | |||| ||
Sbjct 577 AAAGAAAAGTTGATTGATTTCTGTGATGTGCTTGATATACC-AGTAAACAAAAGT-ACTG 634
Query 668 TGAAAAAAGAAGAACTTGCTGTCAA-AGTGCTTGAATTTTTGGAATCTCCCAAGGAAACA 726
||||||| |||||||| ||||| || ||||||||||||||||| || |||||| | ||||
Sbjct 635 TGAAAAAGGAAGAACTGGCTGT-AAGAGTGCTTGAATTTTTGGTATGTCCCAAAGCAACA 693
Query 727 AGAGATGTTGTAATTGCTGATCA-AGAAAAGCAGGCGAAAAAGCGC---AAGAGTACA-C 781
|| ||| || || |||||||| | |||||| | | ||||||||| ||||| ||| |
Sbjct 694 AGGGATATTCTACTTGCTGAT-AGTGAAAAGGAAACTAAAAAGCGCAAGAAGAGCACATC 752
Query 782 AAAGAAGGGGGAAATCTGGAGAATCTTCGGACA--CCCCAGCCAAGAGGAAAAGGCAAAC 839
||||| | || ||||||||||| || ||| |||||| ||||||| |||||| |
Sbjct 753 GAAGAA-CGTGACCTCTGGAGAATCATC--ACATGTCCCAGCTAAGAGGAGAAGGCAGGC 809
Query 840 -AAAAAAGAGAGATCAGCCATCTGACACTGAAGAGGGCAA-GGATGAAG-GAGATGCTGA 896
|| ||| | ||| |||||| |||| |||| | | || || || || || |||| ||
Sbjct 810 GAAGAAACA-AGAACAGCCAACTGAGACTG-A-A-GGAAATGG-TG-AGTCTGATGTTGG 863
Query 897 TTCTGAAGGAACTAATGATC-CTCATGAAGAAGATGAGGCAACTCCAGAGGAAGAAAGTG 955
||| |||||||| ||||| | || ||| ||||||||| | | |||||||||||||||
Sbjct 864 TTCCGAAGGAACAAATGA-CTCTAATGGAGAAGATGATGTAGCTCCAGAGGAAGAAAACA 922
Query 956 AC--CA-TGAAAAGACTGACACTGAAGATGAAAAAGACAAAGCTGAGGTTG-AGA--AA- 1008
|| | |||| | ||||| ||||||||||| ||||| ||||| ||| | ||| ||
Sbjct 923 ACAAAAGTGAAGATACTGAAACTGAAGATGAGAAAGATAAAGCCAAGG-AGAAGACTAAG 981
Query 1009 CCATCCAATAAGAAAAGATCATCGAAAAA-GACTGTAG-AGGAG-AGCTCAGGGTCCAAA 1065
|| || |||||||| | | || ||||| |||| || ||||| | | || | | |
Sbjct 982 TCAACCGATAAGAAACGCTTGTC-AAAAAGGACT-AAGAAGGAGAAAC-CA--G--C--A 1032
Query 1066 GGT-AAGGATAAGCAAGCTTCTGCCAAAGGTTCTGCAAAATCTGGT-GAAAAGTTCTCCA 1123
| | || || || || ||| |||||||||||||||||| || | ||||| || ||
Sbjct 1033 GCTGAA-GAGGAG-AA--ATCTATTAAAGGTTCTGCAAAATCTAGTCG-AAAGTCCTTCA 1087
Query 1124 AACAAATTGCTAAGTCAACTTCATC-CCCAGCTAAGAAGCAAAAAGTTGATCATGTCGAG 1182
|||| | | ||| |||||| |||| | ||| ||||||||||| |||||| | | |||
Sbjct 1088 GACAAGTCGATAAATCAACTACATCATCAAGC-AAGAAGCAAAAGGTTGATAAAGACGAT 1146
Query 1183 TCTTCTAAAGAGAAAAGCAAGAAACAGCCGAGTAAGCCACAGGC-TAAGGCATCTAAAGA 1241
|| |||||||||||| |||||| |||| | ||||| |||||||| |||| ||| |||||
Sbjct 1147 TCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGCAAAAGG-ATCCAAAGA 1205
Query 1242 GAAAGGTA-AAGCCAC-TAAGAAAGGCAAAGCCAAAGCAGAGCCCACCAGAGAAGAGA-T 1298
|||| | || || | |||||||| ||| |||| | | ||||| ||| |||| | |
Sbjct 1206 TCAAGG-ACAATCC-CGAAAGAAAGGTAAA---AAAG-A-A-CCCACAAGAAAAGA-ACT 1256
Query 1299 GCTTGAAGTGGTGTCCAAAATTCTGAAGGAAGTAGACTTCAATACGGCTACACTGTCAGA 1358
|| || ||||||| |||||||||||||||||||||||||||||||||| || || || ||
Sbjct 1257 GCATGTAGTGGTGACCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACTCTATCTGA 1316
Query 1359 TATTCTGCAGAAGCTAAGCGA-CCATTTTGGTGTCGAACTG-TCGCATAGAAAACCAGAG 1416
|||||| | |||||| | || ||||||||| | || || | |||||||||| |||||
Sbjct 1317 TATTCTACGGAAGCTTGG-GAGCCATTTTGGAATTGATCTTAT-GCATAGAAAAGCAGAG 1374
Query 1417 GTGAAGGATGTTATCACAGATGCCATAAATGCAATGACTGATGACgaagatgatgaa-ga 1475
||||||||| | || ||||||||||| || | ||||| |||||| || ||||| ||| ||
Sbjct 1375 GTGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATGATGATGA-GAAAGA 1433
Query 1476 agaagacga-agagga 1490
|||||| | ||||||
Sbjct 1434 GGAAGAC-ACAGAGGA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5