BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332580
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63580.1 | Symbols: FLS2, ATFLS2 | flavonol synthase 2 | chr... 1389 0.0
> AT5G63580.1 | Symbols: FLS2, ATFLS2 | flavonol synthase 2 | chr5:25454730-25456476
FORWARD LENGTH=1137
Length=1137
Score = 1389 bits (752), Expect = 0.0
Identities = 874/934 (94%), Gaps = 4/934 (0%)
Strand=Plus/Plus
Query 1 ATGGAAATCGAGAGAGACCAACACATTTCTCCACCATCTCTTCTCGCCGAGACGATCCCT 60
|||||| | |||||||| |||||||||||||||||||||||| | ||| |||||||||||
Sbjct 1 ATGGAAGTTGAGAGAGATCAACACATTTCTCCACCATCTCTTATGGCCAAGACGATCCCT 60
Query 61 ATCATCGATCTAAGCAATCTTGATGAAGAGCTAGTGGCGCGTGCGGTGGTGCAAGCGAGT 120
||||||||||||||||||||||| |||||||||||||| | |||||||||| ||| ||||
Sbjct 61 ATCATCGATCTAAGCAATCTTGACGAAGAGCTAGTGGCACATGCGGTGGTGAAAGGGAGT 120
Query 121 GAAGAGTGGGGGATTTTTCACGTGGTTAATCATGGAATTCCGTTGGATCTGATACGGCGG 180
||||||||||| |||||||||||||||||||| ||||| ||| ||||| |||||| ||||
Sbjct 121 GAAGAGTGGGGCATTTTTCACGTGGTTAATCACGGAATCCCGATGGATTTGATACAGCGG 180
Query 181 TTGAAGGAGGTTGGTACACAGTTCTTTGAGCTCCCGGAGACGGAGAAGAAAGCCGTAGCG 240
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TTGAAGGACGTTGGTACACAGTTCTTCGAGCTCCCGGAGACGGAGAAGAAAGCCGTAGCA 240
Query 241 AAACAAGATGGCTCCAAAGACTTTGAAGGTTACACGACGAATCTCAAGTATGTAGAAGGA 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 241 AAACAAGATGGCTCCAAAGACTTCGAAGGTTACACGACGAATCTCAAGTATGTAAAAGGT 300
Query 301 GAGGTTTGGACCGAGAATCTTTTTCACAGAATCTGGCCACCTTCGTGTATCAATTTTAAT 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 301 GAGGTTTGGACCGAGAATCTTTTTCACAGAATCTGGCCACCGACGTGTATCAATTTTGAT 360
Query 361 TACTGGCCCAAAAATCCTCCTCAATACAGGGAAGTGATTGAGGAGTACACAAAGGATACT 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 TACTGGCCCAAGAATCCTCCTCAATACAGGGAAGTGATTGAGGAGTACACAAAGGAGACT 420
Query 421 AAGAAGCTATCAGAGAGGATTTTAGGGTATCTATCAGAGGGATTAGGGTTACCACGTGAG 480
||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 421 AAGAAGCTATCCGAGAGGATTTTAGGGTATTTATCAGAGGGATTAGGGTTACCAAGTGAG 480
Query 481 GCCTTGATACAAGGTCTCGGCGGCGAATCAACAGAGTATGTAATGAGGATGAACAATTAT 540
|||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||
Sbjct 481 GCCTTGATACAAGGTCTCGGTGGGGAATCGACCGAGTATGTAATGAGGATCAACAATTAT 540
Query 541 CCTCCTGACCCGAAACCAGATTTGACTCTAGGAGTGCCGGAGCACACTGACATCATCGGA 600
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CCTCCTGACCCGAAACCTGATTTGACTCTAGGAGTGCCGGAGCACACTGACATCATTGGA 600
Query 601 ATCACAATCATTATAACCAATGAAGTTCCAGGTCTTCAGATTTTCAAGGATGATCGTTGG 660
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 601 ATCACAATCATTATCACCAATGAAGTTCCAGGGCTTCAGATTTTCAAGGACGATCATTGG 660
Query 661 TTCGATGTCCACTACATTCCCTCAGCCATAACCGTCAACATTGGCGATCAGATAATGAGG 720
|| |||||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 661 TTAGATGTCCACTACATTCCCTCCTCTATAACCGTCAACATTGGCGATCAGATAAT--GG 718
Query 721 CTGAGCAATTGCAAGTATAAGAATGTGTTGCATAGAGCCATAGTGGATAGGGAAAAGCAA 780
||||||||| | ||||| |||||||||||||||||||| |||||||||| ||| || |||
Sbjct 719 CTGAGCAATGGAAAGTACAAGAATGTGTTGCATAGAGCGATAGTGGATAAGGAGAATCAA 778
Query 781 AGGATGTCATGGCCGGTTTTTGTGGATGCTAATCCTGATGTGGTCATCGGACCATTGCCG 840
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 AGGATGTCATGGCCGGTTTTTGTGGATGCTAATCCTGATGTGGTTATCGGACCATTGCCG 838
Query 841 GAGCTCATTACCTGCAG-TAATCCCTCAAAGTTCAAGCCTATTACTTGCAAGGACTTTAA 899
|||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 839 GAGCTCATTACCGGC-GATAATCCATCAAAGTTCAAGCCTATTACTTGCAAGGACTTTAA 897
Query 900 GTACCGTAGGCTCCTCAAACTTCCTATCGAGTGA 933
||||||||||||||||||||||||||||||||||
Sbjct 898 GTACCGTAGGCTCCTCAAACTTCCTATCGAGTGA 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5