BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332593
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63700.1 | Symbols: | zinc ion binding;DNA binding | chr5:2... 2494 0.0
> AT5G63700.1 | Symbols: | zinc ion binding;DNA binding | chr5:25493717-25497632
REVERSE LENGTH=2026
Length=2026
Score = 2494 bits (1350), Expect = 0.0
Identities = 1496/1567 (95%), Gaps = 8/1567 (1%)
Strand=Plus/Plus
Query 7 AATGTAGTGGAGATTGTggaggaggaggaggaggatgagaaggagtgtgaggaTTGGTGC 66
||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct 16 AATGTAGTGGAGATTTTGGATGATGAGGAGGAGGATGAGAAGGAGTGTGAGGATTGGTGC 75
Query 67 TTCATCTGCAAAGACGGTGGAGACCTAATGCTCTGTGACTTCAAAGACTGTCCAAAAGTA 126
|| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 76 TTTATCTGTAAAGATGGTGGAAACCTAATGCTCTGTGACTTCAAAGACTGTCCAAAAGTT 135
Query 127 TATCATGAGAGTTGCGTTGAAAAGGGTAGCGCAACAAGCAAGAATGGAGACTCGTATATC 186
|||||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 136 TATCATGAAAGTTGCGTTGAAAAGGATAGCTCAGCAAGCAAGAATGGAGACTCGTATATC 195
Query 187 TGTATGTGGCACAGTTGCTACTTGTGTAAGAAGACACCAAAGCTATGCTGCCTCTGTTGC 246
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 196 TGTATGTGGCACAGTTGCTACTTGTGTAAGAAAACACCAAAGCTATGCTGCCTTTGTTGC 255
Query 247 TCACATGCTGTATGTGAAGGCTGTGTTACTCATGCTGAGTTTATTCAACTTAAAGAGAAT 306
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 256 TCACATGCTGTATGTGAAGGCTGTGTCACTCATGCTGAGTTTATTCAACTTAAAGGGGAT 315
Query 307 AAAGGGTTATGCAATCAATGCCAGGAGTATGTATTTGCTTTAGAAGAAATTCAAGAGTAT 366
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 316 AAAGGGTTATGCAATCAATGCCAGGAGTATGTCTTTGCTTTAGAAGAAATTCAAGAATAT 375
Query 367 GATGCTGCTGGGGATAAGCTTGACTTGACAGATCGGAATACATTTGAGTGTCTGTTTCTT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GATGCTGCTGGGGATAAGCTTGACTTGACAGATCGGAATACATTTGAGTGTCTGTTTCTT 435
Query 427 GAGTATTGGGAAATTGTTAAAAAACAAGAAGATCTAACTTTTGACGAGGTCCGCAATGTC 486
|||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 436 GAGTATTGGGAAATTGCGAAAAAACAAGAAGGTCTAACTTTTGACGATGTCCGCAAGGTC 495
Query 487 TGCGCTTCAAAGCCACAAAAGAAAGGTGTCAAGTCAAAGTACAAAGATGATCCCAAATTT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TGCGCTTCAAAGCCACAAAAGAAAGGTGTCAAGTCAAAGTACAAAGATGATCCCAAATTT 555
Query 547 TCGCTTGGCGATGTCCACACTTCAAAGTCACGAAAGAAAGGCGACAAGCTGAAGTACAAA 606
|||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 556 TCGCTTGGTGATGTCCACACTTCAAAGTCACAAAAGAAAGGCGACAAGCTGAAGAACAAA 615
Query 607 GATGATCCCAAATTTCCGCTTGGTGATGTCCACACTTCAAAGTCAGGAAAGAAAGGCGTC 666
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 616 GATGATCCCAAATTTGCGCTTGGTGATGCCCACACTTCAAAGTCAGGAAAGAAAGGCGTC 675
Query 667 AAGCTGAAGAACAAAGATGATCCCAAATTTTCCCTATCTGACCATGCGGTAGAGGATGCA 726
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 676 AAGCTGAAGAACAAAGATGATCCCAAATTTTTAGTATCTGACCATGCGGTTGAAGATGCA 735
Query 727 GTTGATTATAAAACA-GTGGGCAAGAAA-AAGAGAATGGAGTTTATCAGATGGGGTTCAA 784
||||||||||||| | || ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 736 GTTGATTATAAAA-AGGTTGGCAA-AAACAAGAGAATGGAGTTTATCAGATGGGGTTCAA 793
Query 785 AGCCCCTCATTGATTTCCTAACGTCCATAGGGGAAGACACCAGAGACGCAATGTCACAAC 844
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 794 AGCCTCTCATTGATTTCCTAACGTCCATAGGGGAAGACACCAGAGAGGCAATGTCACAAC 853
Query 845 ATAGTGTGGAGTCAGTTATCCGCAGGTACATTCGTGAGAAAAACCTGCTTGACCGTGAAA 904
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ATAGTGTTGAGTCAGTTATCCGCAGGTACATTCGTGAGAAAAACCTGCTTGACCGTGAAA 913
Query 905 AGAAGAAGAAAGTTCATTGTGATGAGAAGCTGTACTCTATCTTCAGGAAAAAGTCTGTAA 964
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 AGAAGAAGAAAGTTCATTGTGATGAGAAGCTGTACTCTATCTTCAGGAAAAAGTCTATAA 973
Query 965 ATCAGAAAAGGATTTATACACTTTTAAATACTCACCTGAAAGAAAACCTTGATCAGGTGG 1024
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 974 ATCAGAAAAGGATTTATACACTTTTGAATACTCACCTGAAAGAAAACCTTGATCAGGTGG 1033
Query 1025 AGTATTTCACACCTTTGGAACCTGGCTTCAGTGAAAAGAAA-GAAAAGCGATTCAGTGAA 1083
||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||
Sbjct 1034 AGTATTTCACACCTTTGGAACTTGGCTTCATTGAAAA-AAATGAAAAGCGATTCAGTGAA 1092
Query 1084 AAGAATGATGAGGTTTTGATGCCGTGCAAGAAGCAAAAAACAGAAAGTTCAGATGAGGAA 1143
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1093 AAGAATGATAAGGTTATGATGCCGTGCAAGAAGCAAAAAACAGAAAGTTCAGATGACGAA 1152
Query 1144 ATTTGTGAGAAGGAAGTGCAACCTGAAATGCGAGCAACTGGTTTCGCCACGATCAATGCA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ATTTGTGAGAAGGAAGTGCAACCTGAAATGCGAGCAACTGGTTTCGCCACGATCAATGCA 1212
Query 1204 GATAATATAAAGCTTGTTTATCTACGTAAGAGCTTAGTCGTAGAGTTGTTGAAGCAGAAT 1263
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1213 GATAATCTAAAGCTTGTTTATCTACGTAAGAGCTTAGTCTTAGAGTTGTTGAAGCAGAAT 1272
Query 1264 GAAAGATTTGTGGACAAAGTGGTGGGAAGCTTTGTGAAACTGAAGAATAACCCTAGGGAC 1323
|| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1273 GATAGCTTTGTGGACAAAGTGGTGGGAAGCTTTGTGAAAGTGAAGAATGGCCCTAGGGAC 1332
Query 1324 CTTATGGCTTACCAGATCTTGCAGGTTACAGGCATTAAAACTGCTGATGACCAGAGTGAG 1383
||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1333 TTTATGGCGTACCAGATCTTGCAGGTTACAGGCATTAAAAATGCTGATGATCAGAGTGAG 1392
Query 1384 GGAGTGCTTCTTCATGTTGCTGGTATGGCAAGTGGTGTTAGCATTTCCAAGTTGGATGAT 1443
|| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1393 GGCGTGCTTCTTCATGTTTCTGGTATGGCAAGTGGTGTTAGCATTTCCAAGCTGGATGAT 1452
Query 1444 TCTGACATAAGCGAGGAAGAGATTAAAGATTTGAAGCAAAAAGTGATGAATGGCCTTCTG 1503
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1453 TCTGACATAAGAGAGGAAGAGATTAAAGATTTGAAGCAAAAAGTGATGAATGGTCTTCTG 1512
Query 1504 AGACAGCCAACAGTTGTGGAGATGGAGCAGAAGGCTAAGGCTCTCCATGT-TGATATAAC 1562
|||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1513 AGACAGACAACTGTTGTGGAGATGGAGCAGAAGGCTAAGGCTCTCCAT-TATGATATAAC 1571
Query 1563 AAAACAT 1569
|||||||
Sbjct 1572 AAAACAT 1578
Score = 195 bits (105), Expect = 2e-48
Identities = 127/138 (92%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1570 AGAGAACTTCTGGAAAAAACTTCAGAGCAGGAGAGGTTACTAAAAGAAACTCCAAGAATC 1629
|||||||||||||| ||| |||||||||||||||||||||||||||||| |||||| |||
Sbjct 1672 AGAGAACTTCTGGAGAAACCTTCAGAGCAGGAGAGGTTACTAAAAGAAATTCCAAGGATC 1731
Query 1630 ATTGAAGACTTGATCGAGATAAAACAAGAACCATCTGTCAGCGGTTTGTCTCATGAGGCG 1689
||||||||||| |||||||| ||||||||||||| |||| |||||||||| |||||||||
Sbjct 1732 ATTGAAGACTTCATCGAGATTAAACAAGAACCATGTGTCGGCGGTTTGTCACATGAGGCG 1791
Query 1690 GTGATAGATATCGATTAA 1707
|| ||| |||||||||||
Sbjct 1792 GTTATAAATATCGATTAA 1809
Score = 182 bits (98), Expect = 1e-44
Identities = 121/132 (92%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 566 CTTCAAAGTCACGAAAGAAAGGCGACAAGCT-GAAGTACAAAGATGATCCCAAATTTCCG 624
|||||||| ||| ||||||||| | |||| | |||||||||||||||||||||||| ||
Sbjct 500 CTTCAAAGCCACAAAAGAAAGGTGTCAAG-TCAAAGTACAAAGATGATCCCAAATTTTCG 558
Query 625 CTTGGTGATGTCCACACTTCAAAGTCAGGAAAGAAAGGCGTCAAGCTGAAGAACAAAGAT 684
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 559 CTTGGTGATGTCCACACTTCAAAGTCACAAAAGAAAGGCGACAAGCTGAAGAACAAAGAT 618
Query 685 GATCCCAAATTT 696
||||||||||||
Sbjct 619 GATCCCAAATTT 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84387116145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5