BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332599
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63820.1 | Symbols: | Protein of unknown function (DUF626) ... 641 0.0
> AT5G63820.1 | Symbols: | Protein of unknown function (DUF626)
| chr5:25541576-25542893 FORWARD LENGTH=678
Length=678
Score = 641 bits (347), Expect = 0.0
Identities = 526/605 (87%), Gaps = 41/605 (7%)
Strand=Plus/Plus
Query 97 GGTTTTGATTATGGATCTGACTTT--T-GCATAGTCGA-GCCTCCTGTGAGCAATGATTA 152
|||||||||||||||| ||||||| | ||||||| | |||||||||||||| ||||||
Sbjct 73 GGTTTTGATTATGGATTTGACTTTACTGGCATAGT-TACGCCTCCTGTGAGCACTGATTA 131
Query 153 CGATGTCACCATTTATGCTAGGCTTGGACTCTACTGCTACAATTTTCAAAAGGGGACAAA 212
||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 132 TGATGTCACCCTTTATGCTAAGCTTGGACTTTACTGCTACAATTTTCAAAAGGGGACAAA 191
Query 213 CTTTAAGTTTGTGCGCTGGGAAAAGTATAATAC-T-GA-GTTCACTTCTTACTTTGACCA 269
||| ||||||||||||||||||||||||||||| | | | |||| ||||| |||| |
Sbjct 192 CTTAAAGTTTGTGCGCTGGGAAAAGTATAATACGTCTACGGGCACTGCTTACATTGATAA 251
Query 270 CTACATCACTTTGGCGGCAAGGGATCCGTCCTGCAACTCTTTCTTCTCTTTTCAGACTGT 329
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 252 CTACATCACTTTGGAGGCAATGGATCCGTCCTGCAACTCTGTCTTCTCTTTTCAGACTGT 311
Query 330 GTTCAGTGCTGCTGGATGTTCTACCCAAGATACTTATCGTGTACAA-ACCTGGAGGGTCT 388
|||||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||
Sbjct 312 GTTCAGTGCTGCTGGATGTTATAACCAAGATACTTATCATGTACAAGAC-TGGAGGGTCT 370
Query 389 TGGCCTGCAGACCCTCATGTGGCAAGCCTGTGAATGA-TAATT-G---GG-ACC-GG--- 438
||||||||||||| ||||||||||| |||||||||| || || | || | ||
Sbjct 371 TGGCCTGCAGACCAACATGTGGCAAGTCTGTGAATGAATATTTTGACCGGCATGAGGCAA 430
Query 439 -G-A-C------ACA--GGTGAAATGCCCAAATGGTTGTCTGATGAGGCCTTGGCCACTG 487
| | | ||| ||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 431 TGGATCCCTTCTACACAGGTAAAATGCCCAAATGGTTGTCTGATGACGCCTTGGCCTTTG 490
Query 488 ACAACAAAAAGTATTACGTGGTGCAAGAATCAGAGCT-GCATGAGAATGACTGGCTGCAT 546
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 491 ACAACAAAAAGTATTACGTGGTGCAAGAATCAGA-CTTGCATGAGAATGACTGGCTGCTT 549
Query 547 CTATTCATGGAAATGGCATTCTTACAAGCAAA-TCCTCATATAGGTGTTTCTTCAAGTGA 605
||||||||||||||| ||||||||||| ||| |||| | |||||||||||||||
Sbjct 550 GTATTCATGGAAATGGTATTCTTACAAGAAAAATCCT------G-TGTTTCTTCAAGTGA 602
Query 606 TCACAAAGCTATAATAAGGAAAACCATGGATGGGATACCAGGACACATGAGTCTTGAAAT 665
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 603 TCACAAAGCTATCATAAGGAAAACCATGGATGGGGTACCAGAACACATGAGTCTTGAAAT 662
Query 666 TGCTT 670
|||||
Sbjct 663 TGCTT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5